Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
SMARCA1P28370 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SMARCA1P28370 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 AC003102.2-201ENST00000589195 1469 ntBASIC17.4■□□□□ 0.38
SMARCA1P28370 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 RN7SKP230-201ENST00000365642 335 ntBASIC17.4■□□□□ 0.38
SMARCA1P28370 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.4■□□□□ 0.38
SMARCA1P28370 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SMARCA1P28370 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.4■□□□□ 0.38
SMARCA1P28370 HLA-V-201ENST00000429037 534 ntBASIC17.4■□□□□ 0.38
SMARCA1P28370 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.4■□□□□ 0.38
SMARCA1P28370 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.4■□□□□ 0.38
SMARCA1P28370 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.4■□□□□ 0.38
SMARCA1P28370 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.4■□□□□ 0.38
SMARCA1P28370 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.4■□□□□ 0.38
SMARCA1P28370 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
SMARCA1P28370 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.4■□□□□ 0.38
SMARCA1P28370 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMARCA1P28370 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.4■□□□□ 0.38
SMARCA1P28370 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SMARCA1P28370 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
SMARCA1P28370 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SMARCA1P28370 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.39■□□□□ 0.38
SMARCA1P28370 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SMARCA1P28370 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.39■□□□□ 0.37
SMARCA1P28370 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 MIR1202-201ENST00000408529 83 ntBASIC17.39■□□□□ 0.37
SMARCA1P28370 AC007969.1-201ENST00000433675 447 ntBASIC17.39■□□□□ 0.37
SMARCA1P28370 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.39■□□□□ 0.37
SMARCA1P28370 ALG3P1-201ENST00000508806 1114 ntBASIC17.39■□□□□ 0.37
SMARCA1P28370 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.39■□□□□ 0.37
SMARCA1P28370 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.39■□□□□ 0.37
SMARCA1P28370 AP003171.2-201ENST00000528208 925 ntBASIC17.39■□□□□ 0.37
SMARCA1P28370 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.39■□□□□ 0.37
SMARCA1P28370 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.39■□□□□ 0.37
SMARCA1P28370 RN7SL713P-201ENST00000582127 302 ntBASIC17.39■□□□□ 0.37
SMARCA1P28370 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.39■□□□□ 0.37
SMARCA1P28370 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.39■□□□□ 0.37
SMARCA1P28370 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.39■□□□□ 0.37
SMARCA1P28370 MIR6752-201ENST00000618442 71 ntBASIC17.39■□□□□ 0.37
SMARCA1P28370 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.39■□□□□ 0.37
SMARCA1P28370 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.39■□□□□ 0.37
SMARCA1P28370 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.39■□□□□ 0.37
SMARCA1P28370 FKBP4P6-201ENST00000457486 1332 ntBASIC17.39■□□□□ 0.37
SMARCA1P28370 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.39■□□□□ 0.37
SMARCA1P28370 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SMARCA1P28370 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
SMARCA1P28370 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.39■□□□□ 0.37
SMARCA1P28370 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SMARCA1P28370 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMARCA1P28370 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
SMARCA1P28370 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.38■□□□□ 0.37
SMARCA1P28370 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.38■□□□□ 0.37
SMARCA1P28370 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.38■□□□□ 0.37
SMARCA1P28370 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms