Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 AL139094.1-201ENST00000405549 1188 ntBASIC19.24■□□□□ 0.67
NPHP1O15259 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC19.24■□□□□ 0.67
NPHP1O15259 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 AC245884.6-201ENST00000515672 1067 ntBASIC19.24■□□□□ 0.67
NPHP1O15259 RNF41-210ENST00000552244 716 ntTSL 3 BASIC19.24■□□□□ 0.67
NPHP1O15259 AC105129.2-201ENST00000559536 390 ntBASIC19.24■□□□□ 0.67
NPHP1O15259 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 OR10B1P-201ENST00000601666 907 ntBASIC19.24■□□□□ 0.67
NPHP1O15259 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.24■□□□□ 0.67
NPHP1O15259 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 MFF-204ENST00000353339 2186 ntTSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.24■□□□□ 0.67
NPHP1O15259 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 KRT8P4-201ENST00000509735 1454 ntBASIC19.23■□□□□ 0.67
NPHP1O15259 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 AL596087.1-201ENST00000400979 1969 ntBASIC19.23■□□□□ 0.67
NPHP1O15259 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.23■□□□□ 0.67
NPHP1O15259 Z97180.1-201ENST00000445173 988 ntBASIC19.23■□□□□ 0.67
NPHP1O15259 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.23■□□□□ 0.67
NPHP1O15259 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC19.23■□□□□ 0.67
NPHP1O15259 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
NPHP1O15259 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 AC138627.1-207ENST00000641560 1006 ntBASIC19.23■□□□□ 0.67
NPHP1O15259 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.23■□□□□ 0.67
NPHP1O15259 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
NPHP1O15259 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NPHP1O15259 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.23■□□□□ 0.67
NPHP1O15259 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.22■□□□□ 0.67
NPHP1O15259 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC19.22■□□□□ 0.67
NPHP1O15259 AL158070.2-201ENST00000623713 1621 ntBASIC19.22■□□□□ 0.67
NPHP1O15259 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
NPHP1O15259 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.22■□□□□ 0.67
NPHP1O15259 ANKRD26P3-201ENST00000454044 2748 ntBASIC19.22■□□□□ 0.67
NPHP1O15259 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
NPHP1O15259 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
NPHP1O15259 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
NPHP1O15259 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC19.22■□□□□ 0.67
NPHP1O15259 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.22■□□□□ 0.67
NPHP1O15259 HINT2P1-201ENST00000419438 481 ntBASIC19.22■□□□□ 0.67
NPHP1O15259 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC19.22■□□□□ 0.67
NPHP1O15259 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 AC044849.1-201ENST00000519737 1188 ntBASIC19.22■□□□□ 0.67
NPHP1O15259 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms