Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 ACTG1P14-201ENST00000446382 1122 ntBASIC13.44□□□□□ -0.26
NKX3-1Q99801 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 AC041040.2-201ENST00000622926 2899 ntBASIC13.44□□□□□ -0.26
NKX3-1Q99801 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 KRT18P28-201ENST00000453838 1332 ntBASIC13.43□□□□□ -0.26
NKX3-1Q99801 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.43□□□□□ -0.26
NKX3-1Q99801 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 PMS2P2-201ENST00000425039 1128 ntBASIC13.43□□□□□ -0.26
NKX3-1Q99801 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 HIST3H2BA-201ENST00000436555 524 ntBASIC13.43□□□□□ -0.26
NKX3-1Q99801 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 AC105021.1-202ENST00000570572 669 ntBASIC13.43□□□□□ -0.26
NKX3-1Q99801 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 AC026979.3-201ENST00000607315 403 ntBASIC13.43□□□□□ -0.26
NKX3-1Q99801 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX3-1Q99801 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
NKX3-1Q99801 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms