Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC13.15□□□□□ -0.3
ABCA4P78363 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 LRRC59-203ENST00000576448 1531 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 AC007663.3-201ENST00000609632 465 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 AL645728.2-202ENST00000641679 227 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
ABCA4P78363 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
ABCA4P78363 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
ABCA4P78363 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
ABCA4P78363 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
ABCA4P78363 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
ABCA4P78363 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.14□□□□□ -0.31
ABCA4P78363 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.14□□□□□ -0.31
ABCA4P78363 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 GCK-209ENST00000616242 2260 ntTSL 5 BASIC13.14□□□□□ -0.31
ABCA4P78363 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA4P78363 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA4P78363 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
ABCA4P78363 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 MIR33B-201ENST00000385104 96 ntBASIC13.14□□□□□ -0.31
ABCA4P78363 AC126915.1-201ENST00000522847 1038 ntBASIC13.14□□□□□ -0.31
ABCA4P78363 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.14□□□□□ -0.31
ABCA4P78363 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.14□□□□□ -0.31
ABCA4P78363 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC13.14□□□□□ -0.31
ABCA4P78363 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA4P78363 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA4P78363 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.14□□□□□ -0.31
ABCA4P78363 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
ABCA4P78363 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC13.14□□□□□ -0.31
ABCA4P78363 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 AC084364.1-201ENST00000551967 1556 ntBASIC13.14□□□□□ -0.31
ABCA4P78363 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA4P78363 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.14□□□□□ -0.31
ABCA4P78363 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA4P78363 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 AC114501.1-201ENST00000445949 172 ntBASIC13.14□□□□□ -0.31
ABCA4P78363 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 AC022217.1-201ENST00000521069 738 ntBASIC13.14□□□□□ -0.31
ABCA4P78363 AC138649.2-201ENST00000615886 705 ntBASIC13.14□□□□□ -0.31
ABCA4P78363 AC022748.3-201ENST00000621828 275 ntBASIC13.14□□□□□ -0.31
ABCA4P78363 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.14□□□□□ -0.31
ABCA4P78363 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA4P78363 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
ABCA4P78363 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 BLK-205ENST00000529894 2017 ntTSL 5 BASIC13.13□□□□□ -0.31
ABCA4P78363 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.13□□□□□ -0.31
ABCA4P78363 LINC00554-201ENST00000564841 3011 ntBASIC13.13□□□□□ -0.31
ABCA4P78363 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
ABCA4P78363 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.13□□□□□ -0.31
ABCA4P78363 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.13□□□□□ -0.31
ABCA4P78363 AC007787.1-201ENST00000588095 1583 ntBASIC13.13□□□□□ -0.31
ABCA4P78363 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 AC092850.2-201ENST00000623821 2697 ntBASIC13.13□□□□□ -0.31
ABCA4P78363 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.13□□□□□ -0.31
ABCA4P78363 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms