Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.71□□□□□ -0.21
CLRN1P58418 RARRES2P5-201ENST00000564013 466 ntBASIC13.71□□□□□ -0.21
CLRN1P58418 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
CLRN1P58418 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.71□□□□□ -0.21
CLRN1P58418 AC011467.4-201ENST00000594891 528 ntBASIC13.71□□□□□ -0.21
CLRN1P58418 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLRN1P58418 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.71□□□□□ -0.21
CLRN1P58418 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CLRN1P58418 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLRN1P58418 CLK3P2-201ENST00000427566 1453 ntBASIC13.71□□□□□ -0.21
CLRN1P58418 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLRN1P58418 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.71□□□□□ -0.21
CLRN1P58418 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.71□□□□□ -0.21
CLRN1P58418 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLRN1P58418 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CLRN1P58418 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.71□□□□□ -0.22
CLRN1P58418 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.71□□□□□ -0.22
CLRN1P58418 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CLRN1P58418 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.71□□□□□ -0.22
CLRN1P58418 LINC02228-204ENST00000642115 2962 ntBASIC13.71□□□□□ -0.22
CLRN1P58418 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.71□□□□□ -0.22
CLRN1P58418 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
CLRN1P58418 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLRN1P58418 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 MIR770-201ENST00000390219 98 ntBASIC13.7□□□□□ -0.22
CLRN1P58418 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.7□□□□□ -0.22
CLRN1P58418 MEP1AP4-201ENST00000423244 1087 ntBASIC13.7□□□□□ -0.22
CLRN1P58418 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 FAM86LP-201ENST00000478302 853 ntBASIC13.7□□□□□ -0.22
CLRN1P58418 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 AC027796.2-201ENST00000575326 344 ntBASIC13.7□□□□□ -0.22
CLRN1P58418 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CLRN1P58418 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CLRN1P58418 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLRN1P58418 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.7□□□□□ -0.22
CLRN1P58418 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.7□□□□□ -0.22
CLRN1P58418 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.69□□□□□ -0.22
CLRN1P58418 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms