Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 AL607033.1-201ENST00000623900 1599 ntBASIC13.03□□□□□ -0.32
USF1P22415 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.03□□□□□ -0.32
USF1P22415 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
USF1P22415 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
USF1P22415 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.03□□□□□ -0.32
USF1P22415 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.03□□□□□ -0.32
USF1P22415 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.03□□□□□ -0.32
USF1P22415 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 RHOXF1P1-202ENST00000635473 501 ntBASIC13.03□□□□□ -0.32
USF1P22415 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 AC020907.1-201ENST00000616460 1350 ntBASIC13.03□□□□□ -0.32
USF1P22415 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.03□□□□□ -0.32
USF1P22415 AC144831.1-201ENST00000573312 2656 ntBASIC13.03□□□□□ -0.32
USF1P22415 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
USF1P22415 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
USF1P22415 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.03□□□□□ -0.32
USF1P22415 AC092384.3-202ENST00000564646 2873 ntBASIC13.03□□□□□ -0.32
USF1P22415 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.02□□□□□ -0.32
USF1P22415 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
USF1P22415 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.02□□□□□ -0.32
USF1P22415 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
USF1P22415 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
USF1P22415 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
USF1P22415 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
USF1P22415 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
USF1P22415 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
USF1P22415 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
USF1P22415 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.02□□□□□ -0.32
USF1P22415 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
USF1P22415 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
USF1P22415 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 AC106760.1-201ENST00000508690 800 ntBASIC13.02□□□□□ -0.33
USF1P22415 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
USF1P22415 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
USF1P22415 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.02□□□□□ -0.33
USF1P22415 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.02□□□□□ -0.33
USF1P22415 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.02□□□□□ -0.33
USF1P22415 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.02□□□□□ -0.33
USF1P22415 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.02□□□□□ -0.33
USF1P22415 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.02□□□□□ -0.33
USF1P22415 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.33
USF1P22415 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
USF1P22415 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
USF1P22415 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 OR2I1P-210ENST00000642037 4691 ntBASIC13.02□□□□□ -0.33
USF1P22415 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.02□□□□□ -0.33
USF1P22415 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms