Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ZPR1-207ENST00000449430 691 ntTSL 37.12□□□□□ -1.276e-7■□□□□ 9.8
YBX3P16989 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC22.67■■□□□ 1.223e-6■□□□□ 9.8
YBX3P16989 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.223e-6■□□□□ 9.8
YBX3P16989 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.58■■□□□ 1.053e-6■□□□□ 9.8
YBX3P16989 RBM14-RBM4-202ENST00000421355 2034 ntTSL 219.92■□□□□ 0.783e-6■□□□□ 9.8
YBX3P16989 RBM14-RBM4-204ENST00000511114 523 ntTSL 416.12■□□□□ 0.173e-6■□□□□ 9.8
YBX3P16989 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.13e-6■□□□□ 9.8
YBX3P16989 YWHAZ-213ENST00000492736 681 ntTSL 329.23■■■□□ 2.273e-14■□□□□ 9.8
YBX3P16989 CHCHD10-204ENST00000520222 384 ntTSL 3 BASIC16■□□□□ 0.156e-14■□□□□ 9.8
YBX3P16989 GNAS-221ENST00000462499 492 ntTSL 220.07■□□□□ 0.84e-7■□□□□ 9.8
YBX3P16989 KDM5B-204ENST00000456180 558 ntTSL 45.31□□□□□ -1.561e-7■□□□□ 9.8
YBX3P16989 PSMB4-203ENST00000474100 755 ntTSL 510.33□□□□□ -0.767e-7■□□□□ 9.8
YBX3P16989 PSMB4-202ENST00000466425 665 ntTSL 27.19□□□□□ -1.267e-7■□□□□ 9.8
YBX3P16989 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.39■□□□□ 0.373e-25■□□□□ 9.8
YBX3P16989 SYNGR2-205ENST00000589183 796 ntTSL 325.09■■□□□ 1.611e-12■□□□□ 9.8
YBX3P16989 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC27.65■■■□□ 2.024e-7■□□□□ 9.8
YBX3P16989 IRAK1-201ENST00000369973 2358 ntTSL 524.65■■□□□ 1.544e-7■□□□□ 9.8
YBX3P16989 IRAK1-208ENST00000444230 1125 ntTSL 523.4■■□□□ 1.344e-7■□□□□ 9.8
YBX3P16989 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.65■□□□□ 0.584e-7■□□□□ 9.8
YBX3P16989 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.014e-7■□□□□ 9.8
YBX3P16989 IRAK1-202ENST00000369974 3319 ntTSL 1 (best) BASIC14.71□□□□□ -0.054e-7■□□□□ 9.8
YBX3P16989 STT3A-203ENST00000525431 552 ntTSL 412.38□□□□□ -0.439e-11■□□□□ 9.8
YBX3P16989 STT3A-213ENST00000531001 325 ntTSL 38.06□□□□□ -1.129e-11■□□□□ 9.8
YBX3P16989 RPN2-203ENST00000373632 1073 ntTSL 517.66■□□□□ 0.422e-8■□□□□ 9.8
YBX3P16989 RPN2-207ENST00000462163 712 ntTSL 311.95□□□□□ -0.52e-8■□□□□ 9.8
YBX3P16989 RPN2-205ENST00000456102 791 ntTSL 39.81□□□□□ -0.842e-8■□□□□ 9.8
YBX3P16989 LDLR-208ENST00000558518 3617 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.583e-8■□□□□ 9.8
YBX3P16989 PGD-205ENST00000483936 680 ntTSL 514.94□□□□□ -0.024e-11■□□□□ 9.8
YBX3P16989 PGD-208ENST00000493288 476 ntTSL 313.58□□□□□ -0.244e-11■□□□□ 9.8
YBX3P16989 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.651e-15■□□□□ 9.8
YBX3P16989 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.641e-15■□□□□ 9.8
YBX3P16989 TOMM7-204ENST00000463284 731 ntTSL 217.6■□□□□ 0.411e-15■□□□□ 9.8
YBX3P16989 TOMM7-202ENST00000372879 514 ntTSL 4 BASIC10.24□□□□□ -0.771e-15■□□□□ 9.8
YBX3P16989 TOMM7-206ENST00000496129 520 ntTSL 1 (best)8.08□□□□□ -1.121e-15■□□□□ 9.8
YBX3P16989 NUP205-202ENST00000461255 1447 ntTSL 59.05□□□□□ -0.964e-7■□□□□ 9.8
YBX3P16989 NUP205-206ENST00000477620 1800 ntTSL 56.02□□□□□ -1.454e-7■□□□□ 9.8
YBX3P16989 PPP2R5C-218ENST00000556260 2013 ntTSL 3 BASIC8.2□□□□□ -1.19e-13■□□□□ 9.8
YBX3P16989 RPS25-201ENST00000524864 1078 ntTSL 218.05■□□□□ 0.489e-21■□□□□ 9.8
YBX3P16989 FBL-211ENST00000601274 877 ntTSL 529.23■■■□□ 2.272e-28■□□□□ 9.8
YBX3P16989 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.842e-28■□□□□ 9.8
YBX3P16989 FASN-205ENST00000584610 857 ntTSL 224.72■■□□□ 1.555e-10■□□□□ 9.8
YBX3P16989 FBL-207ENST00000597634 726 ntTSL 520.48■□□□□ 0.872e-28■□□□□ 9.8
YBX3P16989 FBL-204ENST00000594443 805 ntTSL 318.19■□□□□ 0.52e-28■□□□□ 9.8
YBX3P16989 FBL-205ENST00000595545 896 ntTSL 211.72□□□□□ -0.532e-28■□□□□ 9.8
YBX3P16989 FBL-206ENST00000597224 732 ntTSL 311.07□□□□□ -0.642e-28■□□□□ 9.8
YBX3P16989 FBL-202ENST00000593503 628 ntTSL 38.16□□□□□ -1.12e-28■□□□□ 9.8
YBX3P16989 LMAN2-203ENST00000502721 639 ntTSL 316.98■□□□□ 0.311e-8■□□□□ 9.8
YBX3P16989 PSMC3-203ENST00000526993 580 ntTSL 225.64■■□□□ 1.71e-8■□□□□ 9.8
YBX3P16989 PSMC3-208ENST00000530887 891 ntTSL 224.95■■□□□ 1.581e-8■□□□□ 9.8
YBX3P16989 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.851e-8■□□□□ 9.8
YBX3P16989 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.821e-8■□□□□ 9.8
YBX3P16989 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.7■□□□□ 0.741e-8■□□□□ 9.8
YBX3P16989 PSMC3-202ENST00000524447 935 ntTSL 319.17■□□□□ 0.661e-8■□□□□ 9.8
YBX3P16989 PSMC3-207ENST00000530651 905 ntTSL 518.51■□□□□ 0.551e-8■□□□□ 9.8
YBX3P16989 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.351e-8■□□□□ 9.8
YBX3P16989 PSMC3-210ENST00000531051 777 ntTSL 516.42■□□□□ 0.221e-8■□□□□ 9.8
YBX3P16989 PSMC3-204ENST00000527906 604 ntTSL 314.68□□□□□ -0.061e-8■□□□□ 9.8
YBX3P16989 BIRC6-210ENST00000483194 702 ntTSL 37.52□□□□□ -1.216e-7■□□□□ 9.8
YBX3P16989 LDLR-201ENST00000252444 5337 ntAPPRIS ALT2 TSL 1 (best)14.14□□□□□ -0.152e-8■□□□□ 9.8
YBX3P16989 MDH2-204ENST00000443006 2020 ntTSL 2 BASIC14.82□□□□□ -0.048e-15■□□□□ 9.8
YBX3P16989 MDH2-201ENST00000315758 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.478e-15■□□□□ 9.8
YBX3P16989 GUK1-227ENST00000485083 871 ntTSL 333.61■■■□□ 2.979e-6■□□□□ 9.8
YBX3P16989 GUK1-236ENST00000493209 735 ntTSL 526.93■■□□□ 1.99e-6■□□□□ 9.8
YBX3P16989 GUK1-231ENST00000485859 325 ntTSL 1 (best)22.36■■□□□ 1.179e-6■□□□□ 9.8
YBX3P16989 GUK1-226ENST00000484953 273 ntTSL 217.69■□□□□ 0.429e-6■□□□□ 9.8
YBX3P16989 GUK1-233ENST00000491613 959 ntTSL 317.47■□□□□ 0.399e-6■□□□□ 9.8
YBX3P16989 GUK1-229ENST00000485733 345 ntTSL 315.23■□□□□ 0.039e-6■□□□□ 9.8
YBX3P16989 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC28.61■■■□□ 2.172e-8■□□□□ 9.8
YBX3P16989 ACAT1-208ENST00000531853 526 ntTSL 426.18■■□□□ 1.782e-8■□□□□ 9.8
YBX3P16989 ACAT1-206ENST00000528370 508 ntTSL 214.07□□□□□ -0.162e-8■□□□□ 9.8
YBX3P16989 ACAT1-205ENST00000527942 493 ntTSL 46.54□□□□□ -1.362e-8■□□□□ 9.8
YBX3P16989 ACTB-209ENST00000473257 556 ntTSL 315.64■□□□□ 0.097e-46■□□□□ 9.8
YBX3P16989 IPO5-225ENST00000493281 544 ntTSL 411.52□□□□□ -0.571e-9■□□□□ 9.8
YBX3P16989 IPO5-221ENST00000490369 542 ntTSL 49.41□□□□□ -0.91e-9■□□□□ 9.8
YBX3P16989 IPO5-219ENST00000485433 524 ntTSL 48.46□□□□□ -1.061e-9■□□□□ 9.8
YBX3P16989 SMARCB1-206ENST00000477836 660 ntTSL 214.38□□□□□ -0.114e-8■□□□□ 9.8
YBX3P16989 SEPT9-226ENST00000589920 580 ntTSL 219.17■□□□□ 0.661e-6■□□□□ 9.8
YBX3P16989 PTBP1-210ENST00000586944 4661 ntTSL 217.83■□□□□ 0.459e-11■□□□□ 9.8
YBX3P16989 EIF2A-216ENST00000494558 710 ntTSL 59.09□□□□□ -0.952e-7■□□□□ 9.8
YBX3P16989 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.99■□□□□ 0.634e-7■□□□□ 9.8
YBX3P16989 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.66■□□□□ 0.264e-7■□□□□ 9.8
YBX3P16989 PKP4-215ENST00000494945 522 ntTSL 513.01□□□□□ -0.331e-7■□□□□ 9.8
YBX3P16989 ARFGAP2-205ENST00000524782 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.444e-7■□□□□ 9.8
YBX3P16989 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.282e-8■□□□□ 9.8
YBX3P16989 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.239e-7■□□□□ 9.8
YBX3P16989 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.39e-7■□□□□ 9.8
YBX3P16989 ME1-201ENST00000369705 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.512e-6■□□□□ 9.8
YBX3P16989 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC26.76■■□□□ 1.873e-8■□□□□ 9.8
YBX3P16989 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.483e-8■□□□□ 9.8
YBX3P16989 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.483e-8■□□□□ 9.8
YBX3P16989 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.423e-8■□□□□ 9.8
YBX3P16989 KIF2C-203ENST00000423289 320 ntTSL 59.75□□□□□ -0.852e-8■□□□□ 9.8
YBX3P16989 USP32-209ENST00000589552 486 ntTSL 34.61□□□□□ -1.672e-6■□□□□ 9.8
YBX3P16989 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.312e-9■□□□□ 9.8
YBX3P16989 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.55□□□□□ -0.083e-7■□□□□ 9.8
YBX3P16989 KDM5B-201ENST00000235790 4418 ntTSL 214.51□□□□□ -0.093e-7■□□□□ 9.8
YBX3P16989 KDM5B-203ENST00000367265 10345 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.473e-7■□□□□ 9.8
YBX3P16989 CD164-209ENST00000512212 590 ntTSL 217.94■□□□□ 0.463e-10■□□□□ 9.8
YBX3P16989 CD164-210ENST00000512821 964 ntTSL 2 BASIC17.94■□□□□ 0.463e-10■□□□□ 9.8
YBX3P16989 ALDOA-217ENST00000566130 801 ntTSL 218.81■□□□□ 0.61e-75■□□□□ 9.8
Retrieved 100 of 29,075 protein–RNA pairs in 192.2 ms