Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 CICP11-201ENST00000434745 2827 ntBASIC16.4■□□□□ 0.22
SSR1P43307 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 AL080243.2-201ENST00000418783 582 ntBASIC16.4■□□□□ 0.22
SSR1P43307 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.4■□□□□ 0.22
SSR1P43307 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.4■□□□□ 0.22
SSR1P43307 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.4■□□□□ 0.22
SSR1P43307 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.4■□□□□ 0.22
SSR1P43307 AL033527.5-202ENST00000641632 1098 ntBASIC16.4■□□□□ 0.22
SSR1P43307 AGAP7P-201ENST00000582299 2062 ntBASIC16.4■□□□□ 0.22
SSR1P43307 AGAP14-201ENST00000624701 2060 ntBASIC16.4■□□□□ 0.22
SSR1P43307 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SSR1P43307 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SSR1P43307 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.4■□□□□ 0.22
SSR1P43307 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.4■□□□□ 0.22
SSR1P43307 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SSR1P43307 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
SSR1P43307 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 TUBB3P1-201ENST00000405796 1332 ntBASIC16.4■□□□□ 0.22
SSR1P43307 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SSR1P43307 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSR1P43307 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
SSR1P43307 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
SSR1P43307 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
SSR1P43307 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SSR1P43307 AL139400.1-201ENST00000366220 510 ntBASIC16.39■□□□□ 0.21
SSR1P43307 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.39■□□□□ 0.21
SSR1P43307 HLA-J-203ENST00000494367 1087 ntBASIC16.39■□□□□ 0.21
SSR1P43307 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.39■□□□□ 0.21
SSR1P43307 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.39■□□□□ 0.21
SSR1P43307 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.39■□□□□ 0.21
SSR1P43307 AC025678.2-201ENST00000562061 970 ntBASIC16.39■□□□□ 0.21
SSR1P43307 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 SPDYE12P-201ENST00000618416 771 ntBASIC16.39■□□□□ 0.21
SSR1P43307 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.39■□□□□ 0.21
SSR1P43307 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC16.39■□□□□ 0.21
SSR1P43307 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.39■□□□□ 0.21
SSR1P43307 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SSR1P43307 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.39■□□□□ 0.21
SSR1P43307 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SSR1P43307 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.39■□□□□ 0.21
SSR1P43307 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSR1P43307 FO538757.1-201ENST00000623083 1397 ntBASIC16.38■□□□□ 0.21
SSR1P43307 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SSR1P43307 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSR1P43307 AC084364.1-201ENST00000551967 1556 ntBASIC16.38■□□□□ 0.21
SSR1P43307 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSR1P43307 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSR1P43307 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SSR1P43307 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC16.38■□□□□ 0.21
SSR1P43307 AC126335.2-201ENST00000623362 4637 ntBASIC16.38■□□□□ 0.21
SSR1P43307 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSR1P43307 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
SSR1P43307 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.38■□□□□ 0.21
SSR1P43307 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSR1P43307 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.38■□□□□ 0.21
SSR1P43307 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.38■□□□□ 0.21
SSR1P43307 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
SSR1P43307 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.38■□□□□ 0.21
SSR1P43307 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.38■□□□□ 0.21
SSR1P43307 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSR1P43307 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms