Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL18A1P39060 MVK-217ENST00000639206 367 ntTSL 5 BASIC19.57■□□□□ 0.72
COL18A1P39060 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC19.56■□□□□ 0.72
COL18A1P39060 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 R3HDM2P2-201ENST00000401880 2116 ntBASIC19.56■□□□□ 0.72
COL18A1P39060 AL365203.3-201ENST00000609742 2057 ntBASIC19.56■□□□□ 0.72
COL18A1P39060 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
COL18A1P39060 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 AC126365.1-201ENST00000578585 1514 ntBASIC19.56■□□□□ 0.72
COL18A1P39060 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL18A1P39060 AL139008.1-201ENST00000437894 228 ntBASIC19.56■□□□□ 0.72
COL18A1P39060 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC19.56■□□□□ 0.72
COL18A1P39060 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC19.56■□□□□ 0.72
COL18A1P39060 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC19.56■□□□□ 0.72
COL18A1P39060 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC19.56■□□□□ 0.72
COL18A1P39060 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC19.56■□□□□ 0.72
COL18A1P39060 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC19.56■□□□□ 0.72
COL18A1P39060 PRORSD1P-202ENST00000563365 2154 ntBASIC19.56■□□□□ 0.72
COL18A1P39060 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
COL18A1P39060 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL18A1P39060 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.56■□□□□ 0.72
COL18A1P39060 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL18A1P39060 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC19.55■□□□□ 0.72
COL18A1P39060 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 RHEB-207ENST00000496004 744 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.55■□□□□ 0.72
COL18A1P39060 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
COL18A1P39060 KHSRPP1-201ENST00000427983 1768 ntBASIC19.55■□□□□ 0.72
COL18A1P39060 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL18A1P39060 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.55■□□□□ 0.72
COL18A1P39060 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.55■□□□□ 0.72
COL18A1P39060 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC19.55■□□□□ 0.72
COL18A1P39060 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC19.55■□□□□ 0.72
COL18A1P39060 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC19.55■□□□□ 0.72
COL18A1P39060 AC234644.1-201ENST00000406065 370 ntBASIC19.55■□□□□ 0.72
COL18A1P39060 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC19.55■□□□□ 0.72
COL18A1P39060 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC19.55■□□□□ 0.72
COL18A1P39060 IGHVIII-5-2-201ENST00000522505 261 ntBASIC19.55■□□□□ 0.72
COL18A1P39060 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL18A1P39060 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC19.54■□□□□ 0.72
COL18A1P39060 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC19.54■□□□□ 0.72
COL18A1P39060 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL18A1P39060 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC19.54■□□□□ 0.72
COL18A1P39060 MARK2P16-201ENST00000605714 1723 ntBASIC19.54■□□□□ 0.72
COL18A1P39060 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 C18orf15-201ENST00000623680 2534 ntBASIC19.54■□□□□ 0.72
COL18A1P39060 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC19.54■□□□□ 0.72
COL18A1P39060 HLA-DQB1-202ENST00000399079 1501 ntBASIC19.54■□□□□ 0.72
COL18A1P39060 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.54■□□□□ 0.72
COL18A1P39060 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC19.54■□□□□ 0.72
COL18A1P39060 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL18A1P39060 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms