Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC27.56■■■□□ 2
NKX2-3Q8TAU0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.56■■■□□ 2
NKX2-3Q8TAU0 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
NKX2-3Q8TAU0 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
NKX2-3Q8TAU0 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC27.55■■■□□ 2
NKX2-3Q8TAU0 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
NKX2-3Q8TAU0 AL136116.3-201ENST00000402907 1138 ntBASIC27.55■■■□□ 2
NKX2-3Q8TAU0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC27.55■■■□□ 2
NKX2-3Q8TAU0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC27.55■■■□□ 2
NKX2-3Q8TAU0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC27.55■■■□□ 2
NKX2-3Q8TAU0 SRR-208ENST00000576848 588 ntTSL 4 BASIC27.55■■■□□ 2
NKX2-3Q8TAU0 AC011551.1-201ENST00000614101 683 ntBASIC27.55■■■□□ 2
NKX2-3Q8TAU0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.55■■■□□ 2
NKX2-3Q8TAU0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
NKX2-3Q8TAU0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC27.54■■■□□ 2
NKX2-3Q8TAU0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC27.54■■■□□ 2
NKX2-3Q8TAU0 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
NKX2-3Q8TAU0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
NKX2-3Q8TAU0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC27.53■■■□□ 2
NKX2-3Q8TAU0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC27.53■■■□□ 2
NKX2-3Q8TAU0 AC137630.3-201ENST00000607245 391 ntBASIC27.53■■■□□ 2
NKX2-3Q8TAU0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC27.53■■■□□ 2
NKX2-3Q8TAU0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
NKX2-3Q8TAU0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC27.52■■■□□ 2
NKX2-3Q8TAU0 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC27.52■■■□□ 2
NKX2-3Q8TAU0 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC27.52■■■□□ 2
NKX2-3Q8TAU0 HLA-L-211ENST00000482052 1765 ntBASIC27.51■■□□□ 1.99
NKX2-3Q8TAU0 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
NKX2-3Q8TAU0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC27.51■■□□□ 1.99
NKX2-3Q8TAU0 AC110285.6-201ENST00000617652 491 ntBASIC27.51■■□□□ 1.99
NKX2-3Q8TAU0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
NKX2-3Q8TAU0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
NKX2-3Q8TAU0 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
NKX2-3Q8TAU0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
NKX2-3Q8TAU0 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
NKX2-3Q8TAU0 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
NKX2-3Q8TAU0 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
NKX2-3Q8TAU0 AC021242.3-201ENST00000607598 1377 ntBASIC27.48■■□□□ 1.99
NKX2-3Q8TAU0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
NKX2-3Q8TAU0 AC133561.4-201ENST00000566112 224 ntBASIC27.48■■□□□ 1.99
NKX2-3Q8TAU0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
NKX2-3Q8TAU0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
NKX2-3Q8TAU0 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
NKX2-3Q8TAU0 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
NKX2-3Q8TAU0 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
NKX2-3Q8TAU0 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
NKX2-3Q8TAU0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
NKX2-3Q8TAU0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC27.47■■□□□ 1.99
NKX2-3Q8TAU0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
NKX2-3Q8TAU0 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
NKX2-3Q8TAU0 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
NKX2-3Q8TAU0 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
NKX2-3Q8TAU0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC27.46■■□□□ 1.99
NKX2-3Q8TAU0 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
NKX2-3Q8TAU0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC27.45■■□□□ 1.99
NKX2-3Q8TAU0 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
NKX2-3Q8TAU0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
NKX2-3Q8TAU0 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC27.45■■□□□ 1.98
NKX2-3Q8TAU0 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC27.45■■□□□ 1.98
NKX2-3Q8TAU0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.45■■□□□ 1.98
NKX2-3Q8TAU0 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
NKX2-3Q8TAU0 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.44■■□□□ 1.98
NKX2-3Q8TAU0 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC27.44■■□□□ 1.98
NKX2-3Q8TAU0 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC27.44■■□□□ 1.98
NKX2-3Q8TAU0 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
NKX2-3Q8TAU0 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
NKX2-3Q8TAU0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
NKX2-3Q8TAU0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC27.42■■□□□ 1.98
NKX2-3Q8TAU0 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC27.42■■□□□ 1.98
NKX2-3Q8TAU0 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
NKX2-3Q8TAU0 AC092028.1-203ENST00000608262 953 ntBASIC27.42■■□□□ 1.98
NKX2-3Q8TAU0 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 AL139125.2-201ENST00000623134 1869 ntBASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 AC096631.2-201ENST00000436136 790 ntBASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC27.41■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms