Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLRN1P58418 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.58■□□□□ 0.89
CLRN1P58418 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.58■□□□□ 0.89
CLRN1P58418 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLRN1P58418 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CLRN1P58418 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLRN1P58418 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CLRN1P58418 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLRN1P58418 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
CLRN1P58418 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.57■□□□□ 0.88
CLRN1P58418 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.57■□□□□ 0.88
CLRN1P58418 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLRN1P58418 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CLRN1P58418 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLRN1P58418 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN1P58418 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN1P58418 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CLRN1P58418 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN1P58418 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN1P58418 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.56■□□□□ 0.88
CLRN1P58418 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN1P58418 THA1P-201ENST00000590384 1145 ntBASIC20.56■□□□□ 0.88
CLRN1P58418 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.56■□□□□ 0.88
CLRN1P58418 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN1P58418 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN1P58418 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
CLRN1P58418 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.56■□□□□ 0.88
CLRN1P58418 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN1P58418 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.55■□□□□ 0.88
CLRN1P58418 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLRN1P58418 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
CLRN1P58418 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CLRN1P58418 AC120024.1-201ENST00000562672 995 ntBASIC20.55■□□□□ 0.88
CLRN1P58418 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLRN1P58418 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLRN1P58418 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLRN1P58418 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.55■□□□□ 0.88
CLRN1P58418 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.54■□□□□ 0.88
CLRN1P58418 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.54■□□□□ 0.88
CLRN1P58418 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLRN1P58418 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLRN1P58418 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLRN1P58418 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLRN1P58418 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLRN1P58418 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CLRN1P58418 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CLRN1P58418 KRT8P33-201ENST00000508125 1423 ntBASIC20.53■□□□□ 0.88
CLRN1P58418 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLRN1P58418 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLRN1P58418 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLRN1P58418 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLRN1P58418 YBX1P4-201ENST00000392794 808 ntBASIC20.53■□□□□ 0.88
CLRN1P58418 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CLRN1P58418 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLRN1P58418 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLRN1P58418 AC004812.2-201ENST00000611079 2094 ntBASIC20.53■□□□□ 0.88
CLRN1P58418 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLRN1P58418 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLRN1P58418 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLRN1P58418 KRT18P24-201ENST00000344739 1156 ntBASIC20.52■□□□□ 0.88
CLRN1P58418 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CLRN1P58418 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLRN1P58418 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.52■□□□□ 0.88
CLRN1P58418 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CLRN1P58418 MIR4508-201ENST00000584178 70 ntBASIC20.52■□□□□ 0.88
CLRN1P58418 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CLRN1P58418 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.52■□□□□ 0.88
CLRN1P58418 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CLRN1P58418 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CLRN1P58418 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.51■□□□□ 0.87
CLRN1P58418 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.51■□□□□ 0.87
CLRN1P58418 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN1P58418 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.5■□□□□ 0.87
CLRN1P58418 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CLRN1P58418 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.5■□□□□ 0.87
CLRN1P58418 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CLRN1P58418 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN1P58418 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
CLRN1P58418 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.49■□□□□ 0.87
CLRN1P58418 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLRN1P58418 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.49■□□□□ 0.87
CLRN1P58418 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.49■□□□□ 0.87
CLRN1P58418 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.49■□□□□ 0.87
CLRN1P58418 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms