Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH3P20585 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH3P20585 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.94■■□□□ 1.26
MSH3P20585 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH3P20585 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.94■■□□□ 1.26
MSH3P20585 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH3P20585 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
MSH3P20585 AL035685.1-201ENST00000636663 812 ntBASIC22.94■■□□□ 1.26
MSH3P20585 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH3P20585 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
MSH3P20585 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH3P20585 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH3P20585 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.93■■□□□ 1.26
MSH3P20585 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
MSH3P20585 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.93■■□□□ 1.26
MSH3P20585 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH3P20585 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH3P20585 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH3P20585 AF131216.4-201ENST00000638924 1588 ntBASIC22.93■■□□□ 1.26
MSH3P20585 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.93■■□□□ 1.26
MSH3P20585 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH3P20585 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH3P20585 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.92■■□□□ 1.26
MSH3P20585 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
MSH3P20585 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH3P20585 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH3P20585 Z92544.1-202ENST00000571933 1220 ntBASIC22.92■■□□□ 1.26
MSH3P20585 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH3P20585 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
MSH3P20585 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
MSH3P20585 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22.91■■□□□ 1.26
MSH3P20585 KRT125P-201ENST00000546827 989 ntBASIC22.91■■□□□ 1.26
MSH3P20585 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH3P20585 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH3P20585 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH3P20585 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH3P20585 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
MSH3P20585 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
MSH3P20585 AC239859.2-201ENST00000444165 318 ntBASIC22.9■■□□□ 1.26
MSH3P20585 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.9■■□□□ 1.26
MSH3P20585 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
MSH3P20585 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
MSH3P20585 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC22.89■■□□□ 1.25
MSH3P20585 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
MSH3P20585 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH3P20585 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.89■■□□□ 1.25
MSH3P20585 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH3P20585 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.88■■□□□ 1.25
MSH3P20585 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
MSH3P20585 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.88■■□□□ 1.25
MSH3P20585 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.88■■□□□ 1.25
MSH3P20585 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.88■■□□□ 1.25
MSH3P20585 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH3P20585 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
MSH3P20585 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
MSH3P20585 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
MSH3P20585 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.87■■□□□ 1.25
MSH3P20585 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.87■■□□□ 1.25
MSH3P20585 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.87■■□□□ 1.25
MSH3P20585 AC021242.3-201ENST00000607598 1377 ntBASIC22.87■■□□□ 1.25
MSH3P20585 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH3P20585 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.86■■□□□ 1.25
MSH3P20585 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
MSH3P20585 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH3P20585 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH3P20585 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
MSH3P20585 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
MSH3P20585 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH3P20585 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH3P20585 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH3P20585 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH3P20585 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.85■■□□□ 1.25
MSH3P20585 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.85■■□□□ 1.25
MSH3P20585 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.85■■□□□ 1.25
MSH3P20585 MIR4787-201ENST00000607364 84 ntBASIC22.85■■□□□ 1.25
MSH3P20585 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH3P20585 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH3P20585 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.84■■□□□ 1.25
MSH3P20585 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH3P20585 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.84■■□□□ 1.25
MSH3P20585 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH3P20585 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH3P20585 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH3P20585 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
MSH3P20585 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH3P20585 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
MSH3P20585 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH3P20585 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
MSH3P20585 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH3P20585 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH3P20585 LINC01124-201ENST00000409786 2117 ntBASIC22.83■■□□□ 1.25
MSH3P20585 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.83■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms