Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PDGFAP04085 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PDGFAP04085 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.52■■□□□ 1.04
PDGFAP04085 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PDGFAP04085 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PDGFAP04085 AC026271.2-201ENST00000428091 497 ntBASIC21.52■■□□□ 1.04
PDGFAP04085 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.52■■□□□ 1.04
PDGFAP04085 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.52■■□□□ 1.04
PDGFAP04085 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.52■■□□□ 1.04
PDGFAP04085 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.52■■□□□ 1.04
PDGFAP04085 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDGFAP04085 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDGFAP04085 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDGFAP04085 SUDS3P1-201ENST00000505831 966 ntBASIC21.51■■□□□ 1.03
PDGFAP04085 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.51■■□□□ 1.03
PDGFAP04085 AL136162.1-201ENST00000607711 1078 ntBASIC21.51■■□□□ 1.03
PDGFAP04085 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDGFAP04085 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PDGFAP04085 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDGFAP04085 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
PDGFAP04085 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.5■■□□□ 1.03
PDGFAP04085 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PDGFAP04085 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PDGFAP04085 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PDGFAP04085 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.5■■□□□ 1.03
PDGFAP04085 MIR6722-201ENST00000617286 78 ntBASIC21.5■■□□□ 1.03
PDGFAP04085 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.5■■□□□ 1.03
PDGFAP04085 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.5■■□□□ 1.03
PDGFAP04085 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PDGFAP04085 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.5■■□□□ 1.03
PDGFAP04085 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PDGFAP04085 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PDGFAP04085 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PDGFAP04085 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.49■■□□□ 1.03
PDGFAP04085 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.49■■□□□ 1.03
PDGFAP04085 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PDGFAP04085 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PDGFAP04085 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.48■■□□□ 1.03
PDGFAP04085 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PDGFAP04085 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PDGFAP04085 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PDGFAP04085 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PDGFAP04085 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.47■■□□□ 1.03
PDGFAP04085 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.47■■□□□ 1.03
PDGFAP04085 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.47■■□□□ 1.03
PDGFAP04085 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.47■■□□□ 1.03
PDGFAP04085 AC090877.2-201ENST00000558441 1738 ntBASIC21.46■■□□□ 1.03
PDGFAP04085 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PDGFAP04085 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PDGFAP04085 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PDGFAP04085 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.46■■□□□ 1.03
PDGFAP04085 AC135279.3-201ENST00000610945 1311 ntBASIC21.46■■□□□ 1.03
PDGFAP04085 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.46■■□□□ 1.03
PDGFAP04085 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
PDGFAP04085 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFAP04085 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFAP04085 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFAP04085 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.45■■□□□ 1.02
PDGFAP04085 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.45■■□□□ 1.02
PDGFAP04085 AC024257.2-201ENST00000549699 147 ntBASIC21.45■■□□□ 1.02
PDGFAP04085 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PDGFAP04085 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PDGFAP04085 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFAP04085 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFAP04085 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFAP04085 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFAP04085 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.44■■□□□ 1.02
PDGFAP04085 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFAP04085 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFAP04085 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFAP04085 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.44■■□□□ 1.02
PDGFAP04085 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.44■■□□□ 1.02
PDGFAP04085 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PDGFAP04085 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFAP04085 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFAP04085 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFAP04085 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFAP04085 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFAP04085 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PDGFAP04085 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.43■■□□□ 1.02
PDGFAP04085 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.43■■□□□ 1.02
PDGFAP04085 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFAP04085 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFAP04085 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFAP04085 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFAP04085 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFAP04085 SRD5A1P1-201ENST00000442297 786 ntBASIC21.42■■□□□ 1.02
PDGFAP04085 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.42■■□□□ 1.02
PDGFAP04085 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFAP04085 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFAP04085 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFAP04085 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFAP04085 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFAP04085 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFAP04085 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.41■■□□□ 1.02
PDGFAP04085 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
PDGFAP04085 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFAP04085 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.41■■□□□ 1.02
PDGFAP04085 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.41■■□□□ 1.02
PDGFAP04085 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms