Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 SNX18-202ENST00000343017 3140 ntBASIC14.95□□□□□ -0.02
VPS4AQ9UN37 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 AC126365.1-201ENST00000578585 1514 ntBASIC14.95□□□□□ -0.02
VPS4AQ9UN37 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 KRT8P44-201ENST00000441609 1350 ntBASIC14.95□□□□□ -0.02
VPS4AQ9UN37 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
VPS4AQ9UN37 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 BTBD7P1-201ENST00000447253 1453 ntBASIC14.94□□□□□ -0.02
VPS4AQ9UN37 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.94□□□□□ -0.02
VPS4AQ9UN37 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4AQ9UN37 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 GNAQP1-201ENST00000444815 1067 ntBASIC14.93□□□□□ -0.02
VPS4AQ9UN37 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 AC093004.1-201ENST00000508850 424 ntBASIC14.93□□□□□ -0.02
VPS4AQ9UN37 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 AC008494.3-201ENST00000606615 944 ntBASIC14.93□□□□□ -0.02
VPS4AQ9UN37 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4AQ9UN37 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms