Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 AC104109.2-201ENST00000602919 1418 ntBASIC14.07□□□□□ -0.16
CLN6Q9NWW5 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AL031595.1-201ENST00000623969 4709 ntBASIC14.06□□□□□ -0.16
CLN6Q9NWW5 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AC018529.2-202ENST00000611482 3087 ntBASIC14.06□□□□□ -0.16
CLN6Q9NWW5 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AL450487.1-201ENST00000426799 995 ntBASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 SLC25A6P4-201ENST00000586535 553 ntBASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AC008267.7-201ENST00000624570 1194 ntBASIC14.06□□□□□ -0.16
CLN6Q9NWW5 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 DMBT1P1-203ENST00000636837 4628 ntBASIC14.06□□□□□ -0.16
CLN6Q9NWW5 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLN6Q9NWW5 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 AL359881.3-201ENST00000602640 1721 ntBASIC14.05□□□□□ -0.16
CLN6Q9NWW5 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.05□□□□□ -0.16
CLN6Q9NWW5 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms