Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 ACKR1-201ENST00000368121 1240 ntBASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 TTTY23B-201ENST00000442790 549 ntBASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AC004066.1-201ENST00000502488 802 ntBASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AP001063.1-201ENST00000568332 529 ntBASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 SSR4P1-203ENST00000599569 2260 ntBASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AC009486.1-201ENST00000569860 813 ntBASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 CLUHP6-201ENST00000580789 941 ntBASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AC015936.2-201ENST00000593177 259 ntBASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AC239800.4-201ENST00000603712 296 ntBASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AC005252.2-201ENST00000624630 1141 ntBASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AC136621.1-201ENST00000624017 2304 ntBASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
TRIM39Q9HCM9 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms