Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 AC104457.1-201ENST00000401024 814 ntBASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 SNHG9-202ENST00000564014 471 ntBASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ATG4AQ8WYN0 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 AP001267.2-201ENST00000532619 2086 ntBASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 TOMM22P5-201ENST00000416399 439 ntBASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 AC004967.1-201ENST00000453589 447 ntBASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 HLA-J-203ENST00000494367 1087 ntBASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 BX640514.1-201ENST00000583223 1918 ntBASIC15.92■□□□□ 0.14
ATG4AQ8WYN0 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 AC044860.1-202ENST00000559481 777 ntBASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 AC073592.8-201ENST00000624126 511 ntBASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms