Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC079781.4-201ENST00000641908 219 ntBASIC15.03■□□□□ -0
SIX3O95343 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SIX3O95343 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.03■□□□□ -0
SIX3O95343 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.03■□□□□ -0
SIX3O95343 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
SIX3O95343 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.02■□□□□ -0
SIX3O95343 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
SIX3O95343 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.02■□□□□ -0
SIX3O95343 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.02■□□□□ -0
SIX3O95343 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.02■□□□□ -0
SIX3O95343 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SIX3O95343 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
SIX3O95343 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.02■□□□□ -0
SIX3O95343 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.02■□□□□ -0
SIX3O95343 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.02■□□□□ -0
SIX3O95343 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.02■□□□□ -0
SIX3O95343 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.02■□□□□ -0
SIX3O95343 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SIX3O95343 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.02■□□□□ -0
SIX3O95343 AP001160.2-201ENST00000596071 487 ntBASIC15.02■□□□□ -0
SIX3O95343 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SIX3O95343 AL590560.3-201ENST00000623350 461 ntBASIC15.02■□□□□ -0
SIX3O95343 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.02■□□□□ -0
SIX3O95343 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.02□□□□□ -0.01
SIX3O95343 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.02□□□□□ -0.01
SIX3O95343 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SIX3O95343 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
SIX3O95343 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.02□□□□□ -0.01
SIX3O95343 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SIX3O95343 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
SIX3O95343 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.01□□□□□ -0.01
SIX3O95343 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.01□□□□□ -0.01
SIX3O95343 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.01□□□□□ -0.01
SIX3O95343 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.01□□□□□ -0.01
SIX3O95343 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
SIX3O95343 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
SIX3O95343 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.01□□□□□ -0.01
SIX3O95343 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 FAM86GP-201ENST00000448322 971 ntBASIC15.01□□□□□ -0.01
SIX3O95343 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
SIX3O95343 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 AC000095.1-201ENST00000603208 874 ntBASIC15.01□□□□□ -0.01
SIX3O95343 AL158211.3-201ENST00000607385 239 ntBASIC15.01□□□□□ -0.01
SIX3O95343 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.01□□□□□ -0.01
SIX3O95343 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.01□□□□□ -0.01
SIX3O95343 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
SIX3O95343 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SIX3O95343 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.01□□□□□ -0.01
SIX3O95343 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms