Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
RTN3O95197 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RTN3O95197 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RTN3O95197 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RTN3O95197 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
RTN3O95197 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.19■□□□□ 0.18
RTN3O95197 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
RTN3O95197 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
RTN3O95197 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
RTN3O95197 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 AL645937.2-201ENST00000396808 931 ntBASIC16.19■□□□□ 0.18
RTN3O95197 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.19■□□□□ 0.18
RTN3O95197 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RTN3O95197 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.19■□□□□ 0.18
RTN3O95197 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.19■□□□□ 0.18
RTN3O95197 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.19■□□□□ 0.18
RTN3O95197 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.19■□□□□ 0.18
RTN3O95197 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTN3O95197 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.19■□□□□ 0.18
RTN3O95197 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RTN3O95197 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RTN3O95197 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
RTN3O95197 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.18■□□□□ 0.18
RTN3O95197 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.18■□□□□ 0.18
RTN3O95197 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.18■□□□□ 0.18
RTN3O95197 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RTN3O95197 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RTN3O95197 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.18■□□□□ 0.18
RTN3O95197 AC022210.1-201ENST00000449856 793 ntBASIC16.18■□□□□ 0.18
RTN3O95197 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.18■□□□□ 0.18
RTN3O95197 CROCCP4-201ENST00000457096 498 ntBASIC16.18■□□□□ 0.18
RTN3O95197 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
RTN3O95197 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RTN3O95197 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.18■□□□□ 0.18
RTN3O95197 AP005482.1-201ENST00000563722 1273 ntBASIC16.18■□□□□ 0.18
RTN3O95197 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.18■□□□□ 0.18
RTN3O95197 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.18■□□□□ 0.18
RTN3O95197 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 AC068587.6-202ENST00000641839 5619 ntBASIC16.18■□□□□ 0.18
RTN3O95197 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
RTN3O95197 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.18■□□□□ 0.18
RTN3O95197 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RTN3O95197 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RTN3O95197 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RTN3O95197 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 AC093525.8-201ENST00000624099 1342 ntBASIC16.18■□□□□ 0.18
RTN3O95197 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RTN3O95197 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
RTN3O95197 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RTN3O95197 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.17■□□□□ 0.18
RTN3O95197 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.17■□□□□ 0.18
RTN3O95197 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms