Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 AL136982.4-201ENST00000437689 1740 ntBASIC11.29□□□□□ -0.6
SMKR1H3BMG3 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 AKR1C7P-201ENST00000305623 895 ntBASIC11.28□□□□□ -0.6
SMKR1H3BMG3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 COPS8-203ENST00000409334 794 ntTSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 PHKG1P2-201ENST00000457537 863 ntBASIC11.28□□□□□ -0.6
SMKR1H3BMG3 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 AC105339.3-201ENST00000560043 636 ntBASIC11.28□□□□□ -0.6
SMKR1H3BMG3 NME3-204ENST00000563498 920 ntTSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 AC061975.2-201ENST00000581722 295 ntBASIC11.28□□□□□ -0.6
SMKR1H3BMG3 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 AC008735.5-201ENST00000623544 497 ntBASIC11.28□□□□□ -0.6
SMKR1H3BMG3 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 MST1P2-201ENST00000457982 2291 ntBASIC11.28□□□□□ -0.6
SMKR1H3BMG3 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
SMKR1H3BMG3 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC11.27□□□□□ -0.6
SMKR1H3BMG3 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 INIP-202ENST00000374236 874 ntTSL 2 BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC11.27□□□□□ -0.61
SMKR1H3BMG3 ATP6V0CP3-201ENST00000417255 467 ntBASIC11.27□□□□□ -0.61
SMKR1H3BMG3 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC11.27□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms