Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 FAM45BP-202ENST00000592932 1624 ntBASIC13.82□□□□□ -0.2
CPNE4Q96A23 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 AL138799.1-201ENST00000448213 1675 ntBASIC13.82□□□□□ -0.2
CPNE4Q96A23 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 GAPDHP21-201ENST00000450301 1010 ntBASIC13.82□□□□□ -0.2
CPNE4Q96A23 AC007389.4-201ENST00000454674 793 ntBASIC13.82□□□□□ -0.2
CPNE4Q96A23 INE1-201ENST00000456273 945 ntBASIC13.82□□□□□ -0.2
CPNE4Q96A23 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 AC063926.2-201ENST00000623766 1308 ntBASIC13.82□□□□□ -0.2
CPNE4Q96A23 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CPNE4Q96A23 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CPNE4Q96A23 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CPNE4Q96A23 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CPNE4Q96A23 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.81□□□□□ -0.2
CPNE4Q96A23 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CPNE4Q96A23 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CPNE4Q96A23 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CPNE4Q96A23 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.81□□□□□ -0.2
CPNE4Q96A23 NUS1P3-201ENST00000423502 862 ntBASIC13.81□□□□□ -0.2
CPNE4Q96A23 AC005034.1-201ENST00000426657 489 ntBASIC13.81□□□□□ -0.2
CPNE4Q96A23 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.81□□□□□ -0.2
CPNE4Q96A23 RN7SL837P-201ENST00000463010 287 ntBASIC13.81□□□□□ -0.2
CPNE4Q96A23 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms