Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC10.89□□□□□ -0.67
CKS1BP61024 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC10.89□□□□□ -0.67
CKS1BP61024 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
CKS1BP61024 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 AC006504.4-201ENST00000592118 1568 ntBASIC10.89□□□□□ -0.67
CKS1BP61024 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
CKS1BP61024 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC10.89□□□□□ -0.67
CKS1BP61024 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 MAML3-203ENST00000509479 6844 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 LINC01230-201ENST00000625222 3017 ntBASIC10.89□□□□□ -0.67
CKS1BP61024 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
CKS1BP61024 KIAA1614-202ENST00000367588 9654 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC10.89□□□□□ -0.67
CKS1BP61024 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC10.89□□□□□ -0.67
CKS1BP61024 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC10.89□□□□□ -0.67
CKS1BP61024 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
CKS1BP61024 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC10.89□□□□□ -0.67
CKS1BP61024 AJ011931.1-201ENST00000618749 2492 ntBASIC10.89□□□□□ -0.67
CKS1BP61024 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CKS1BP61024 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
CKS1BP61024 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
CKS1BP61024 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
CKS1BP61024 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC10.88□□□□□ -0.67
CKS1BP61024 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 DKFZP434H168-201ENST00000567381 1905 ntBASIC10.88□□□□□ -0.67
CKS1BP61024 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
CKS1BP61024 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC10.88□□□□□ -0.67
CKS1BP61024 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 MTRF1LP2-201ENST00000506027 1122 ntBASIC10.88□□□□□ -0.67
CKS1BP61024 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC10.88□□□□□ -0.67
CKS1BP61024 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 AC107918.2-201ENST00000530817 355 ntBASIC10.88□□□□□ -0.67
CKS1BP61024 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC10.88□□□□□ -0.67
CKS1BP61024 SART3-203ENST00000546611 1184 ntBASIC10.88□□□□□ -0.67
CKS1BP61024 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC10.88□□□□□ -0.67
CKS1BP61024 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC10.88□□□□□ -0.67
CKS1BP61024 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC10.88□□□□□ -0.67
CKS1BP61024 MIR3652-201ENST00000579335 131 ntBASIC10.88□□□□□ -0.67
CKS1BP61024 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 LCK-206ENST00000373564 2137 ntTSL 5 BASIC10.88□□□□□ -0.67
CKS1BP61024 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 AC134407.3-201ENST00000624035 2139 ntBASIC10.88□□□□□ -0.67
CKS1BP61024 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
CKS1BP61024 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC10.88□□□□□ -0.67
CKS1BP61024 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC10.88□□□□□ -0.67
CKS1BP61024 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC10.88□□□□□ -0.67
CKS1BP61024 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CKS1BP61024 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CKS1BP61024 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC10.87□□□□□ -0.67
CKS1BP61024 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CKS1BP61024 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
CKS1BP61024 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
CKS1BP61024 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms