Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SMARCA1P28370 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SMARCA1P28370 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.49■□□□□ 0.39
SMARCA1P28370 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.49■□□□□ 0.39
SMARCA1P28370 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SMARCA1P28370 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.49■□□□□ 0.39
SMARCA1P28370 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.49■□□□□ 0.39
SMARCA1P28370 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
SMARCA1P28370 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.49■□□□□ 0.39
SMARCA1P28370 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SMARCA1P28370 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.49■□□□□ 0.39
SMARCA1P28370 AC078819.1-201ENST00000547454 765 ntBASIC17.49■□□□□ 0.39
SMARCA1P28370 AC012085.1-201ENST00000548270 765 ntBASIC17.49■□□□□ 0.39
SMARCA1P28370 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.49■□□□□ 0.39
SMARCA1P28370 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.49■□□□□ 0.39
SMARCA1P28370 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.49■□□□□ 0.39
SMARCA1P28370 AC008687.7-202ENST00000637404 953 ntBASIC17.49■□□□□ 0.39
SMARCA1P28370 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.49■□□□□ 0.39
SMARCA1P28370 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SMARCA1P28370 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.49■□□□□ 0.39
SMARCA1P28370 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMARCA1P28370 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.49■□□□□ 0.39
SMARCA1P28370 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.49■□□□□ 0.39
SMARCA1P28370 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.48■□□□□ 0.39
SMARCA1P28370 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SMARCA1P28370 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.48■□□□□ 0.39
SMARCA1P28370 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.48■□□□□ 0.39
SMARCA1P28370 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.48■□□□□ 0.39
SMARCA1P28370 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.48■□□□□ 0.39
SMARCA1P28370 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.48■□□□□ 0.39
SMARCA1P28370 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.48■□□□□ 0.39
SMARCA1P28370 AC004466.1-201ENST00000599515 1080 ntBASIC17.48■□□□□ 0.39
SMARCA1P28370 COX11-210ENST00000639671 696 ntBASIC17.48■□□□□ 0.39
SMARCA1P28370 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SMARCA1P28370 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
SMARCA1P28370 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SMARCA1P28370 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
SMARCA1P28370 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMARCA1P28370 CLUHP2-201ENST00000426660 1303 ntBASIC17.47■□□□□ 0.39
SMARCA1P28370 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms