Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14□□□□□ -0.17
HOXD4P09016 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 FAM86MP-201ENST00000340703 885 ntBASIC14□□□□□ -0.17
HOXD4P09016 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14□□□□□ -0.17
HOXD4P09016 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 AL355864.2-201ENST00000447420 863 ntBASIC14□□□□□ -0.17
HOXD4P09016 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14□□□□□ -0.17
HOXD4P09016 CROCCP4-201ENST00000457096 498 ntBASIC14□□□□□ -0.17
HOXD4P09016 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14□□□□□ -0.17
HOXD4P09016 FAM8A2P-201ENST00000528813 1142 ntBASIC14□□□□□ -0.17
HOXD4P09016 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14□□□□□ -0.17
HOXD4P09016 AC124283.3-201ENST00000570869 594 ntBASIC14□□□□□ -0.17
HOXD4P09016 MIR5189-201ENST00000577370 114 ntBASIC14□□□□□ -0.17
HOXD4P09016 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14□□□□□ -0.17
HOXD4P09016 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14□□□□□ -0.17
HOXD4P09016 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 AC107918.4-201ENST00000641966 3141 ntBASIC13.99□□□□□ -0.17
HOXD4P09016 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 AC018665.1-201ENST00000622927 1362 ntBASIC13.99□□□□□ -0.17
HOXD4P09016 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.99□□□□□ -0.17
HOXD4P09016 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC13.99□□□□□ -0.17
HOXD4P09016 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.99□□□□□ -0.17
HOXD4P09016 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.99□□□□□ -0.17
HOXD4P09016 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 AL606495.2-201ENST00000605867 535 ntBASIC13.99□□□□□ -0.17
HOXD4P09016 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.99□□□□□ -0.17
HOXD4P09016 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 AL607033.1-201ENST00000623900 1599 ntBASIC13.99□□□□□ -0.17
HOXD4P09016 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms