Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 AC132938.4-201ENST00000623835 848 ntBASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLCF1Q9UBD9 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CLCF1Q9UBD9 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AC092850.2-201ENST00000623821 2697 ntBASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 FAM21FP-201ENST00000426241 1131 ntBASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AC026954.1-201ENST00000429771 1293 ntBASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AL583810.1-201ENST00000553344 1045 ntBASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AC008687.7-202ENST00000637404 953 ntBASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 AL596257.1-201ENST00000641463 2694 ntBASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLCF1Q9UBD9 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms