Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.89■□□□□ 0.93
MSH6P52701 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSH6P52701 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.89■□□□□ 0.93
MSH6P52701 AC090502.4-201ENST00000551714 1386 ntBASIC20.89■□□□□ 0.93
MSH6P52701 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 INE2-201ENST00000630399 1874 ntBASIC20.88■□□□□ 0.93
MSH6P52701 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.88■□□□□ 0.93
MSH6P52701 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC20.88■□□□□ 0.93
MSH6P52701 MIR557-201ENST00000385239 98 ntBASIC20.88■□□□□ 0.93
MSH6P52701 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC20.88■□□□□ 0.93
MSH6P52701 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC20.88■□□□□ 0.93
MSH6P52701 AC026410.1-201ENST00000507366 1101 ntBASIC20.88■□□□□ 0.93
MSH6P52701 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC20.88■□□□□ 0.93
MSH6P52701 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
MSH6P52701 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC20.88■□□□□ 0.93
MSH6P52701 AC093752.3-201ENST00000567343 901 ntBASIC20.88■□□□□ 0.93
MSH6P52701 HPN-206ENST00000597419 1212 ntTSL 5 BASIC20.88■□□□□ 0.93
MSH6P52701 AC107464.3-201ENST00000609172 737 ntBASIC20.88■□□□□ 0.93
MSH6P52701 AC025262.2-201ENST00000623975 1056 ntBASIC20.88■□□□□ 0.93
MSH6P52701 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC20.88■□□□□ 0.93
MSH6P52701 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 STK26-204ENST00000481105 1835 ntTSL 2 BASIC20.88■□□□□ 0.93
MSH6P52701 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
MSH6P52701 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC20.88■□□□□ 0.93
MSH6P52701 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
MSH6P52701 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH6P52701 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.88■□□□□ 0.93
MSH6P52701 AC018695.7-201ENST00000624587 2492 ntBASIC20.87■□□□□ 0.93
MSH6P52701 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
MSH6P52701 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH6P52701 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 AC136759.1-202ENST00000530858 2194 ntBASIC20.87■□□□□ 0.93
MSH6P52701 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
MSH6P52701 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH6P52701 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
MSH6P52701 NUDT4P2-201ENST00000578341 546 ntBASIC20.87■□□□□ 0.93
MSH6P52701 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH6P52701 AC011840.2-201ENST00000563063 1520 ntBASIC20.87■□□□□ 0.93
MSH6P52701 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH6P52701 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC20.87■□□□□ 0.93
MSH6P52701 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
MSH6P52701 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH6P52701 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH6P52701 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH6P52701 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
MSH6P52701 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC20.86■□□□□ 0.93
MSH6P52701 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
MSH6P52701 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC20.86■□□□□ 0.93
MSH6P52701 BCAS2P2-201ENST00000425064 674 ntBASIC20.86■□□□□ 0.93
MSH6P52701 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC20.86■□□□□ 0.93
MSH6P52701 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 AC012158.2-201ENST00000536546 354 ntBASIC20.86■□□□□ 0.93
MSH6P52701 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
MSH6P52701 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.86■□□□□ 0.93
MSH6P52701 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC20.86■□□□□ 0.93
MSH6P52701 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
MSH6P52701 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MSH6P52701 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MSH6P52701 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.86■□□□□ 0.93
MSH6P52701 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms