Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A5P29400 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A5P29400 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A5P29400 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.94■□□□□ 0.46
COL4A5P29400 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL4A5P29400 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
COL4A5P29400 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC17.94■□□□□ 0.46
COL4A5P29400 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.94■□□□□ 0.46
COL4A5P29400 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC17.94■□□□□ 0.46
COL4A5P29400 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A5P29400 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A5P29400 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL4A5P29400 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A5P29400 AL807761.2-201ENST00000422849 729 ntBASIC17.93■□□□□ 0.46
COL4A5P29400 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A5P29400 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL4A5P29400 RPSAP15-201ENST00000448168 861 ntBASIC17.93■□□□□ 0.46
COL4A5P29400 AC131206.1-201ENST00000538078 1211 ntBASIC17.93■□□□□ 0.46
COL4A5P29400 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL4A5P29400 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL4A5P29400 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A5P29400 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A5P29400 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A5P29400 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A5P29400 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.93■□□□□ 0.46
COL4A5P29400 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.93■□□□□ 0.46
COL4A5P29400 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 HIST2H2BA-201ENST00000412169 381 ntBASIC17.93■□□□□ 0.46
COL4A5P29400 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC17.93■□□□□ 0.46
COL4A5P29400 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 AL022344.2-201ENST00000568976 968 ntBASIC17.93■□□□□ 0.46
COL4A5P29400 MIR3188-201ENST00000583494 85 ntBASIC17.93■□□□□ 0.46
COL4A5P29400 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC17.93■□□□□ 0.46
COL4A5P29400 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A5P29400 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A5P29400 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
COL4A5P29400 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL4A5P29400 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A5P29400 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL4A5P29400 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC17.92■□□□□ 0.46
COL4A5P29400 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A5P29400 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A5P29400 IDS-203ENST00000428056 1213 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A5P29400 TSPY25P-201ENST00000429463 745 ntBASIC17.92■□□□□ 0.46
COL4A5P29400 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC17.92■□□□□ 0.46
COL4A5P29400 AL139008.1-201ENST00000437894 228 ntBASIC17.92■□□□□ 0.46
COL4A5P29400 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A5P29400 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A5P29400 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
COL4A5P29400 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A5P29400 RN7SL81P-201ENST00000493781 261 ntBASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 140.6 ms