Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AC138969.2-201ENST00000532739 9932 ntBASIC11.79□□□□□ -0.52
HLA-DMBP28068 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 RPL28-205ENST00000558131 444 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AP001059.3-201ENST00000619053 235 ntBASIC11.79□□□□□ -0.52
HLA-DMBP28068 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 USP35-204ENST00000530267 2419 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 SPDYE17-201ENST00000412399 783 ntBASIC11.78□□□□□ -0.52
HLA-DMBP28068 AC074338.1-201ENST00000416825 156 ntBASIC11.78□□□□□ -0.52
HLA-DMBP28068 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 SPDYE7P-202ENST00000420373 878 ntBASIC11.78□□□□□ -0.52
HLA-DMBP28068 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 KRT18P64-201ENST00000434946 1219 ntBASIC11.78□□□□□ -0.52
HLA-DMBP28068 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 PTK7-212ENST00000476760 902 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms