Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
RNF40O75150 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
RNF40O75150 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.72■□□□□ 0.27
RNF40O75150 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.72■□□□□ 0.27
RNF40O75150 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.72■□□□□ 0.27
RNF40O75150 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.72■□□□□ 0.27
RNF40O75150 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.72■□□□□ 0.27
RNF40O75150 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.72■□□□□ 0.27
RNF40O75150 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.72■□□□□ 0.27
RNF40O75150 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC16.72■□□□□ 0.27
RNF40O75150 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 C18orf15-201ENST00000623680 2534 ntBASIC16.72■□□□□ 0.27
RNF40O75150 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF40O75150 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RNF40O75150 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RNF40O75150 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF40O75150 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 AC105250.1-201ENST00000509378 2057 ntBASIC16.71■□□□□ 0.27
RNF40O75150 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
RNF40O75150 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
RNF40O75150 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF40O75150 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF40O75150 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.71■□□□□ 0.27
RNF40O75150 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF40O75150 API5-211ENST00000534695 560 ntTSL 5 BASIC16.71■□□□□ 0.27
RNF40O75150 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.71■□□□□ 0.27
RNF40O75150 AC140912.1-201ENST00000577171 1054 ntBASIC16.71■□□□□ 0.27
RNF40O75150 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
RNF40O75150 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.71■□□□□ 0.27
RNF40O75150 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
RNF40O75150 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RNF40O75150 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF40O75150 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF40O75150 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF40O75150 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
RNF40O75150 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF40O75150 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF40O75150 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
RNF40O75150 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
RNF40O75150 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
RNF40O75150 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF40O75150 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms