Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
TPM4P67936 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.33■□□□□ 0.37
TPM4P67936 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM4P67936 AL355306.1-201ENST00000415580 579 ntBASIC17.33■□□□□ 0.36
TPM4P67936 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TPM4P67936 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM4P67936 RN7SL510P-201ENST00000581311 263 ntBASIC17.33■□□□□ 0.36
TPM4P67936 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
TPM4P67936 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM4P67936 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM4P67936 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
TPM4P67936 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM4P67936 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM4P67936 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.32■□□□□ 0.36
TPM4P67936 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TPM4P67936 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.32■□□□□ 0.36
TPM4P67936 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 GHSR-202ENST00000427970 912 ntBASIC17.32■□□□□ 0.36
TPM4P67936 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM4P67936 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM4P67936 AL662844.1-201ENST00000546340 181 ntBASIC17.32■□□□□ 0.36
TPM4P67936 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.32■□□□□ 0.36
TPM4P67936 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TPM4P67936 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TPM4P67936 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM4P67936 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TPM4P67936 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM4P67936 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TPM4P67936 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM4P67936 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM4P67936 AC015656.1-201ENST00000624209 3578 ntBASIC17.32■□□□□ 0.36
TPM4P67936 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TPM4P67936 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM4P67936 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
TPM4P67936 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM4P67936 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM4P67936 AC104109.2-201ENST00000602919 1418 ntBASIC17.31■□□□□ 0.36
TPM4P67936 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.31■□□□□ 0.36
TPM4P67936 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM4P67936 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TPM4P67936 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TPM4P67936 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.31■□□□□ 0.36
TPM4P67936 AZGP1P1-201ENST00000411909 902 ntBASIC17.31■□□□□ 0.36
TPM4P67936 AC007967.2-201ENST00000432613 625 ntBASIC17.31■□□□□ 0.36
TPM4P67936 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.31■□□□□ 0.36
TPM4P67936 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 IGHV3-62-201ENST00000520057 340 ntBASIC17.31■□□□□ 0.36
TPM4P67936 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.31■□□□□ 0.36
TPM4P67936 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.31■□□□□ 0.36
TPM4P67936 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.31■□□□□ 0.36
TPM4P67936 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM4P67936 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM4P67936 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms