Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.69□□□□□ -0.38
CDX1P47902 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.69□□□□□ -0.38
CDX1P47902 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.69□□□□□ -0.38
CDX1P47902 MIR943-201ENST00000401286 94 ntBASIC12.69□□□□□ -0.38
CDX1P47902 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CDX1P47902 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 AL353705.2-201ENST00000428243 662 ntBASIC12.69□□□□□ -0.38
CDX1P47902 AC055876.3-201ENST00000431496 288 ntBASIC12.69□□□□□ -0.38
CDX1P47902 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.69□□□□□ -0.38
CDX1P47902 DUX4L27-201ENST00000554796 1261 ntBASIC12.69□□□□□ -0.38
CDX1P47902 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC12.69□□□□□ -0.38
CDX1P47902 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.69□□□□□ -0.38
CDX1P47902 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.69□□□□□ -0.38
CDX1P47902 MIR4453-201ENST00000584019 89 ntBASIC12.69□□□□□ -0.38
CDX1P47902 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.69□□□□□ -0.38
CDX1P47902 AL158211.3-201ENST00000607385 239 ntBASIC12.69□□□□□ -0.38
CDX1P47902 AC138649.4-201ENST00000612222 287 ntBASIC12.69□□□□□ -0.38
CDX1P47902 AC003101.2-201ENST00000612557 442 ntBASIC12.69□□□□□ -0.38
CDX1P47902 AC007967.4-201ENST00000614700 386 ntBASIC12.69□□□□□ -0.38
CDX1P47902 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC12.69□□□□□ -0.38
CDX1P47902 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CDX1P47902 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 AL035456.1-201ENST00000456064 1369 ntBASIC12.69□□□□□ -0.38
CDX1P47902 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.68□□□□□ -0.38
CDX1P47902 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 STK40-201ENST00000359297 4837 ntTSL 2 BASIC12.68□□□□□ -0.38
CDX1P47902 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.68□□□□□ -0.38
CDX1P47902 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
CDX1P47902 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
CDX1P47902 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.68□□□□□ -0.38
CDX1P47902 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
CDX1P47902 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC12.68□□□□□ -0.38
CDX1P47902 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC12.68□□□□□ -0.38
CDX1P47902 RNA5SP410-201ENST00000516285 106 ntBASIC12.68□□□□□ -0.38
CDX1P47902 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.68□□□□□ -0.38
CDX1P47902 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.68□□□□□ -0.38
CDX1P47902 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CDX1P47902 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CDX1P47902 CDC14C-201ENST00000428251 1719 ntBASIC12.68□□□□□ -0.38
CDX1P47902 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.68□□□□□ -0.38
CDX1P47902 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.68□□□□□ -0.38
CDX1P47902 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDX1P47902 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CDX1P47902 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms