Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.11■□□□□ 0.01
SHMT2P34897 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SHMT2P34897 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
SHMT2P34897 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.11■□□□□ 0.01
SHMT2P34897 CICP4-201ENST00000447359 2812 ntBASIC15.11■□□□□ 0.01
SHMT2P34897 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.1■□□□□ 0.01
SHMT2P34897 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.1■□□□□ 0.01
SHMT2P34897 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SHMT2P34897 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.1■□□□□ 0.01
SHMT2P34897 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.1■□□□□ 0.01
SHMT2P34897 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.1■□□□□ 0.01
SHMT2P34897 DGCR5-201ENST00000399539 862 ntBASIC15.1■□□□□ 0.01
SHMT2P34897 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SHMT2P34897 ELK1P1-201ENST00000485699 580 ntBASIC15.1■□□□□ 0.01
SHMT2P34897 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.1■□□□□ 0.01
SHMT2P34897 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.1■□□□□ 0.01
SHMT2P34897 WASH4P-201ENST00000564273 1246 ntBASIC15.1■□□□□ 0.01
SHMT2P34897 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.1■□□□□ 0.01
SHMT2P34897 BRI3BPP1-201ENST00000594224 787 ntBASIC15.1■□□□□ 0.01
SHMT2P34897 AL049840.4-201ENST00000602422 811 ntBASIC15.1■□□□□ 0.01
SHMT2P34897 MIR8072-201ENST00000614241 80 ntBASIC15.1■□□□□ 0.01
SHMT2P34897 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
SHMT2P34897 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.1■□□□□ 0.01
SHMT2P34897 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 AC005089.1-201ENST00000619486 2241 ntBASIC15.1■□□□□ 0.01
SHMT2P34897 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SHMT2P34897 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SHMT2P34897 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
SHMT2P34897 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
SHMT2P34897 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.1■□□□□ 0.01
SHMT2P34897 AC007292.2-201ENST00000593524 1812 ntBASIC15.1■□□□□ 0.01
SHMT2P34897 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.1■□□□□ 0.01
SHMT2P34897 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHMT2P34897 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SHMT2P34897 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SHMT2P34897 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SHMT2P34897 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SHMT2P34897 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.09■□□□□ 0.01
SHMT2P34897 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 NORAD-201ENST00000565493 5339 ntBASIC15.09■□□□□ 0.01
SHMT2P34897 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHMT2P34897 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
SHMT2P34897 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.09■□□□□ 0.01
SHMT2P34897 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms