Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 DMBT1P1-203ENST00000636837 4628 ntBASIC17.05■□□□□ 0.32
TPM1P09493 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
TPM1P09493 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
TPM1P09493 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.05■□□□□ 0.32
TPM1P09493 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
TPM1P09493 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TPM1P09493 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.05■□□□□ 0.32
TPM1P09493 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.05■□□□□ 0.32
TPM1P09493 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.05■□□□□ 0.32
TPM1P09493 RNA5SP416-201ENST00000516838 111 ntBASIC17.05■□□□□ 0.32
TPM1P09493 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.05■□□□□ 0.32
TPM1P09493 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.05■□□□□ 0.32
TPM1P09493 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.05■□□□□ 0.32
TPM1P09493 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 AC084364.1-201ENST00000551967 1556 ntBASIC17.05■□□□□ 0.32
TPM1P09493 AL031595.1-201ENST00000623969 4709 ntBASIC17.05■□□□□ 0.32
TPM1P09493 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
TPM1P09493 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TPM1P09493 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
TPM1P09493 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.04■□□□□ 0.32
TPM1P09493 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TPM1P09493 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
TPM1P09493 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TPM1P09493 AC006504.5-208ENST00000588784 2401 ntBASIC17.04■□□□□ 0.32
TPM1P09493 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.04■□□□□ 0.32
TPM1P09493 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.04■□□□□ 0.32
TPM1P09493 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TPM1P09493 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.04■□□□□ 0.32
TPM1P09493 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.04■□□□□ 0.32
TPM1P09493 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC17.04■□□□□ 0.32
TPM1P09493 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TPM1P09493 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
TPM1P09493 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.03■□□□□ 0.32
TPM1P09493 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TPM1P09493 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.03■□□□□ 0.32
TPM1P09493 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 PPP1R26P4-201ENST00000619065 3527 ntBASIC17.03■□□□□ 0.32
TPM1P09493 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TPM1P09493 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
TPM1P09493 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 TET3-201ENST00000305799 5174 ntTSL 5 BASIC17.03■□□□□ 0.32
TPM1P09493 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC17.03■□□□□ 0.32
TPM1P09493 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.03■□□□□ 0.32
TPM1P09493 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TPM1P09493 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.03■□□□□ 0.32
TPM1P09493 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms