Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC19.91■□□□□ 0.78
USP54Q70EL1 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.91■□□□□ 0.78
USP54Q70EL1 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
USP54Q70EL1 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.91■□□□□ 0.78
USP54Q70EL1 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
USP54Q70EL1 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
USP54Q70EL1 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC19.91■□□□□ 0.78
USP54Q70EL1 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC19.91■□□□□ 0.78
USP54Q70EL1 AC092299.1-201ENST00000632679 757 ntBASIC19.91■□□□□ 0.78
USP54Q70EL1 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.91■□□□□ 0.78
USP54Q70EL1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.91■□□□□ 0.78
USP54Q70EL1 MIR557-201ENST00000385239 98 ntBASIC19.91■□□□□ 0.78
USP54Q70EL1 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 AC104784.1-201ENST00000473096 294 ntBASIC19.91■□□□□ 0.78
USP54Q70EL1 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC19.91■□□□□ 0.78
USP54Q70EL1 CCNC-217ENST00000523985 958 ntTSL 2 BASIC19.91■□□□□ 0.78
USP54Q70EL1 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC19.91■□□□□ 0.78
USP54Q70EL1 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
USP54Q70EL1 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
USP54Q70EL1 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.91■□□□□ 0.78
USP54Q70EL1 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC19.91■□□□□ 0.78
USP54Q70EL1 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC19.91■□□□□ 0.78
USP54Q70EL1 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP54Q70EL1 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC19.9■□□□□ 0.78
USP54Q70EL1 AL139384.1-201ENST00000612143 3047 ntBASIC19.9■□□□□ 0.78
USP54Q70EL1 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP54Q70EL1 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP54Q70EL1 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC19.9■□□□□ 0.78
USP54Q70EL1 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP54Q70EL1 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP54Q70EL1 AC013726.1-201ENST00000563747 2285 ntBASIC19.9■□□□□ 0.78
USP54Q70EL1 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.9■□□□□ 0.78
USP54Q70EL1 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC19.9■□□□□ 0.78
USP54Q70EL1 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USP54Q70EL1 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP54Q70EL1 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP54Q70EL1 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC19.9■□□□□ 0.78
USP54Q70EL1 AC098935.1-201ENST00000446057 611 ntBASIC19.9■□□□□ 0.78
USP54Q70EL1 LY6E-208ENST00000520531 490 ntTSL 2 BASIC19.9■□□□□ 0.78
USP54Q70EL1 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USP54Q70EL1 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
USP54Q70EL1 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
USP54Q70EL1 AC027237.1-201ENST00000560942 655 ntBASIC19.9■□□□□ 0.78
USP54Q70EL1 AC027601.3-201ENST00000622907 509 ntBASIC19.9■□□□□ 0.78
USP54Q70EL1 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP54Q70EL1 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC19.9■□□□□ 0.78
USP54Q70EL1 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC19.9■□□□□ 0.78
USP54Q70EL1 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP54Q70EL1 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
USP54Q70EL1 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
USP54Q70EL1 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.89■□□□□ 0.78
USP54Q70EL1 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
USP54Q70EL1 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
USP54Q70EL1 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.89■□□□□ 0.78
USP54Q70EL1 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
USP54Q70EL1 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
USP54Q70EL1 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.89■□□□□ 0.77
USP54Q70EL1 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
USP54Q70EL1 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19.89■□□□□ 0.77
USP54Q70EL1 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC19.89■□□□□ 0.77
USP54Q70EL1 ST13P19-201ENST00000442505 1124 ntBASIC19.89■□□□□ 0.77
USP54Q70EL1 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC19.89■□□□□ 0.77
USP54Q70EL1 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC19.89■□□□□ 0.77
USP54Q70EL1 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC19.89■□□□□ 0.77
USP54Q70EL1 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC19.89■□□□□ 0.77
USP54Q70EL1 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC19.89■□□□□ 0.77
USP54Q70EL1 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC19.89■□□□□ 0.77
USP54Q70EL1 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.89■□□□□ 0.77
USP54Q70EL1 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
USP54Q70EL1 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC19.89■□□□□ 0.77
USP54Q70EL1 DOC2GP-204ENST00000639052 2548 ntBASIC19.89■□□□□ 0.77
USP54Q70EL1 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP54Q70EL1 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.89■□□□□ 0.77
USP54Q70EL1 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms