Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL031731.1-201ENST00000642131 2094 ntBASIC17.75■□□□□ 0.43
CTCFP49711 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
CTCFP49711 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.74■□□□□ 0.43
CTCFP49711 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CTCFP49711 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 PCDHB19P-201ENST00000570871 2371 ntBASIC17.74■□□□□ 0.43
CTCFP49711 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.74■□□□□ 0.43
CTCFP49711 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.74■□□□□ 0.43
CTCFP49711 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.74■□□□□ 0.43
CTCFP49711 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 RNU1-114P-201ENST00000365297 166 ntBASIC17.74■□□□□ 0.43
CTCFP49711 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC17.74■□□□□ 0.43
CTCFP49711 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC17.74■□□□□ 0.43
CTCFP49711 CHMP1AP1-201ENST00000445563 662 ntBASIC17.74■□□□□ 0.43
CTCFP49711 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC17.74■□□□□ 0.43
CTCFP49711 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC17.74■□□□□ 0.43
CTCFP49711 AP003171.2-201ENST00000528208 925 ntBASIC17.74■□□□□ 0.43
CTCFP49711 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC17.74■□□□□ 0.43
CTCFP49711 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC17.74■□□□□ 0.43
CTCFP49711 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC17.74■□□□□ 0.43
CTCFP49711 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC17.74■□□□□ 0.43
CTCFP49711 RNF216P1-203ENST00000404404 2427 ntBASIC17.74■□□□□ 0.43
CTCFP49711 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CTCFP49711 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
CTCFP49711 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTCFP49711 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CTCFP49711 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
CTCFP49711 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CTCFP49711 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC17.73■□□□□ 0.43
CTCFP49711 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC17.73■□□□□ 0.43
CTCFP49711 SCARNA21-201ENST00000517026 139 ntBASIC17.73■□□□□ 0.43
CTCFP49711 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC17.73■□□□□ 0.43
CTCFP49711 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC17.73■□□□□ 0.43
CTCFP49711 RPL17P45-201ENST00000586289 509 ntBASIC17.73■□□□□ 0.43
CTCFP49711 AC007718.1-201ENST00000621078 280 ntBASIC17.73■□□□□ 0.43
CTCFP49711 LINC00431-202ENST00000636375 159 ntBASIC17.73■□□□□ 0.43
CTCFP49711 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTCFP49711 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTCFP49711 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTCFP49711 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTCFP49711 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTCFP49711 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTCFP49711 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTCFP49711 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CTCFP49711 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CTCFP49711 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.73■□□□□ 0.43
CTCFP49711 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTCFP49711 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.73■□□□□ 0.43
CTCFP49711 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CTCFP49711 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CTCFP49711 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.72■□□□□ 0.43
CTCFP49711 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CTCFP49711 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CTCFP49711 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.72■□□□□ 0.43
CTCFP49711 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CTCFP49711 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 HNRNPA1P58-201ENST00000403629 610 ntBASIC17.72■□□□□ 0.43
CTCFP49711 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms