Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TMEM261P1-201ENST00000604899 340 ntBASIC15.13■□□□□ 0.01
SHMT2P34897 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.13■□□□□ 0.01
SHMT2P34897 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SHMT2P34897 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SHMT2P34897 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SHMT2P34897 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SHMT2P34897 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SHMT2P34897 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.12■□□□□ 0.01
SHMT2P34897 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.12■□□□□ 0.01
SHMT2P34897 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SHMT2P34897 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SHMT2P34897 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.12■□□□□ 0.01
SHMT2P34897 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SHMT2P34897 AC098614.1-201ENST00000368528 745 ntBASIC15.12■□□□□ 0.01
SHMT2P34897 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SHMT2P34897 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.12■□□□□ 0.01
SHMT2P34897 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.12■□□□□ 0.01
SHMT2P34897 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.12■□□□□ 0.01
SHMT2P34897 RN7SL692P-201ENST00000464677 288 ntBASIC15.12■□□□□ 0.01
SHMT2P34897 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.12■□□□□ 0.01
SHMT2P34897 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.12■□□□□ 0.01
SHMT2P34897 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.12■□□□□ 0.01
SHMT2P34897 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.12■□□□□ 0.01
SHMT2P34897 AC105233.6-201ENST00000642093 218 ntBASIC15.12■□□□□ 0.01
SHMT2P34897 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.12■□□□□ 0.01
SHMT2P34897 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.12■□□□□ 0.01
SHMT2P34897 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.12■□□□□ 0.01
SHMT2P34897 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.12■□□□□ 0.01
SHMT2P34897 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.12■□□□□ 0.01
SHMT2P34897 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SHMT2P34897 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHMT2P34897 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.12■□□□□ 0.01
SHMT2P34897 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SHMT2P34897 AC092127.1-201ENST00000567093 3455 ntBASIC15.11■□□□□ 0.01
SHMT2P34897 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SHMT2P34897 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 AP006294.1-201ENST00000415407 339 ntBASIC15.11■□□□□ 0.01
SHMT2P34897 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 AL442647.2-201ENST00000429864 857 ntBASIC15.11■□□□□ 0.01
SHMT2P34897 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SHMT2P34897 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.11■□□□□ 0.01
SHMT2P34897 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.11■□□□□ 0.01
SHMT2P34897 AC092552.1-201ENST00000547243 906 ntBASIC15.11■□□□□ 0.01
SHMT2P34897 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.11■□□□□ 0.01
SHMT2P34897 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.11■□□□□ 0.01
SHMT2P34897 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.11■□□□□ 0.01
SHMT2P34897 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.11■□□□□ 0.01
SHMT2P34897 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.11■□□□□ 0.01
SHMT2P34897 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHMT2P34897 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms