Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.81■□□□□ 0.28
RFX1P22670 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.81■□□□□ 0.28
RFX1P22670 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
RFX1P22670 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 TOMM22P5-201ENST00000416399 439 ntBASIC16.81■□□□□ 0.28
RFX1P22670 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.81■□□□□ 0.28
RFX1P22670 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.81■□□□□ 0.28
RFX1P22670 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 AC044860.1-202ENST00000559481 777 ntBASIC16.81■□□□□ 0.28
RFX1P22670 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.81■□□□□ 0.28
RFX1P22670 AC099568.2-201ENST00000609194 695 ntBASIC16.81■□□□□ 0.28
RFX1P22670 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.81■□□□□ 0.28
RFX1P22670 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
RFX1P22670 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
RFX1P22670 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
RFX1P22670 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX1P22670 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.81■□□□□ 0.28
RFX1P22670 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.81■□□□□ 0.28
RFX1P22670 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 DBET-201ENST00000630918 3363 ntBASIC16.8■□□□□ 0.28
RFX1P22670 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.8■□□□□ 0.28
RFX1P22670 KRT18P43-201ENST00000469825 1281 ntBASIC16.8■□□□□ 0.28
RFX1P22670 SDHAP3-202ENST00000515467 728 ntBASIC16.8■□□□□ 0.28
RFX1P22670 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 AL512361.1-201ENST00000554200 418 ntBASIC16.8■□□□□ 0.28
RFX1P22670 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
RFX1P22670 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 AGAP7P-201ENST00000582299 2062 ntBASIC16.8■□□□□ 0.28
RFX1P22670 AGAP14-201ENST00000624701 2060 ntBASIC16.8■□□□□ 0.28
RFX1P22670 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
RFX1P22670 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RFX1P22670 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 LINC01101-201ENST00000622953 1884 ntBASIC16.8■□□□□ 0.28
RFX1P22670 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RFX1P22670 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX1P22670 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms