Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 AC097359.2-201ENST00000604992 2389 ntBASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 AP000347.1-202ENST00000435868 847 ntBASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 AC051619.7-201ENST00000568314 623 ntBASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 SAMD11P1-201ENST00000571429 661 ntBASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 SPDYE12P-201ENST00000618416 771 ntBASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMA1Q9UHB6 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
LIMA1Q9UHB6 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIMA1Q9UHB6 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.83■□□□□ 0.29
LIMA1Q9UHB6 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
LIMA1Q9UHB6 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.83■□□□□ 0.29
LIMA1Q9UHB6 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 AP001267.2-201ENST00000532619 2086 ntBASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 AL138828.2-201ENST00000615812 383 ntBASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 AL109936.8-201ENST00000641772 604 ntBASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMA1Q9UHB6 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms