Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AC113367.3-201ENST00000508316 1912 ntBASIC17.6■□□□□ 0.41
ATL3Q6DD88 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AL360270.3-201ENST00000609118 1348 ntBASIC17.59■□□□□ 0.41
ATL3Q6DD88 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AC004066.1-201ENST00000502488 802 ntBASIC17.59■□□□□ 0.41
ATL3Q6DD88 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AC092337.1-201ENST00000568699 1129 ntBASIC17.59■□□□□ 0.41
ATL3Q6DD88 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.59■□□□□ 0.41
ATL3Q6DD88 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AC004461.2-201ENST00000629517 803 ntBASIC17.59■□□□□ 0.41
ATL3Q6DD88 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATL3Q6DD88 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 PKD1P5-201ENST00000532415 10291 ntBASIC17.59■□□□□ 0.41
ATL3Q6DD88 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.59■□□□□ 0.41
ATL3Q6DD88 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
ATL3Q6DD88 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.58■□□□□ 0.41
ATL3Q6DD88 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATL3Q6DD88 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.58■□□□□ 0.41
ATL3Q6DD88 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.58■□□□□ 0.41
ATL3Q6DD88 MTHFR-210ENST00000641407 2387 ntBASIC17.58■□□□□ 0.41
ATL3Q6DD88 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
ATL3Q6DD88 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATL3Q6DD88 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATL3Q6DD88 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.58■□□□□ 0.4
ATL3Q6DD88 TUBB3P1-201ENST00000405796 1332 ntBASIC17.58■□□□□ 0.4
ATL3Q6DD88 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATL3Q6DD88 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATL3Q6DD88 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
ATL3Q6DD88 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms