Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 AC005077.2-201ENST00000449786 690 ntBASIC17.13■□□□□ 0.33
VTA1Q9NP79 HIST2H2BC-201ENST00000498492 580 ntBASIC17.13■□□□□ 0.33
VTA1Q9NP79 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 AL451050.2-201ENST00000606967 682 ntBASIC17.13■□□□□ 0.33
VTA1Q9NP79 AP001002.3-201ENST00000623482 206 ntBASIC17.13■□□□□ 0.33
VTA1Q9NP79 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VTA1Q9NP79 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.13■□□□□ 0.33
VTA1Q9NP79 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 AC004945.1-201ENST00000416738 983 ntBASIC17.12■□□□□ 0.33
VTA1Q9NP79 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 AL354877.1-201ENST00000424412 413 ntBASIC17.12■□□□□ 0.33
VTA1Q9NP79 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 RHOQP1-201ENST00000555758 579 ntBASIC17.12■□□□□ 0.33
VTA1Q9NP79 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 AC106872.11-201ENST00000605838 421 ntBASIC17.12■□□□□ 0.33
VTA1Q9NP79 AL021578.1-201ENST00000613646 709 ntBASIC17.12■□□□□ 0.33
VTA1Q9NP79 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VTA1Q9NP79 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.12■□□□□ 0.33
VTA1Q9NP79 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
VTA1Q9NP79 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VTA1Q9NP79 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VTA1Q9NP79 MST1L-201ENST00000442552 2185 ntBASIC17.11■□□□□ 0.33
VTA1Q9NP79 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.11■□□□□ 0.33
VTA1Q9NP79 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.11■□□□□ 0.33
VTA1Q9NP79 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VTA1Q9NP79 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms