Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 AC232323.1-201ENST00000540724 2099 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 REXO1L5P-201ENST00000622260 2098 ntBASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SMARCD3Q6STE5 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ELL2P1-201ENST00000413990 1906 ntBASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 LINC00552-201ENST00000625151 2579 ntBASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ALG1L5P-201ENST00000482043 771 ntBASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AC022145.2-201ENST00000598203 171 ntBASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AC018529.1-201ENST00000613063 361 ntBASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AC105339.1-204ENST00000636249 355 ntBASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 AC084364.1-201ENST00000551967 1556 ntBASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMARCD3Q6STE5 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 AL359258.3-201ENST00000622910 2331 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms