Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 AC134312.5-201ENST00000568031 1313 ntBASIC15.29■□□□□ 0.04
SRP54P61011 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SRP54P61011 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
SRP54P61011 AC012441.1-201ENST00000446669 685 ntBASIC15.29■□□□□ 0.04
SRP54P61011 KRT223P-202ENST00000449164 1292 ntBASIC15.29■□□□□ 0.04
SRP54P61011 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 AC119751.2-201ENST00000504529 210 ntBASIC15.29■□□□□ 0.04
SRP54P61011 AP001582.1-201ENST00000525856 295 ntBASIC15.29■□□□□ 0.04
SRP54P61011 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
SRP54P61011 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.29■□□□□ 0.04
SRP54P61011 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SRP54P61011 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SRP54P61011 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SRP54P61011 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.28■□□□□ 0.04
SRP54P61011 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SRP54P61011 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 PDIA3P1-201ENST00000471856 1510 ntBASIC15.28■□□□□ 0.04
SRP54P61011 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 ACKR1-201ENST00000368121 1240 ntBASIC15.28■□□□□ 0.04
SRP54P61011 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.28■□□□□ 0.04
SRP54P61011 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SRP54P61011 GAPDHP40-201ENST00000505218 1006 ntBASIC15.28■□□□□ 0.04
SRP54P61011 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.28■□□□□ 0.04
SRP54P61011 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.28■□□□□ 0.04
SRP54P61011 AC023824.1-201ENST00000562945 2975 ntBASIC15.28■□□□□ 0.04
SRP54P61011 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 MSTO2P-201ENST00000314835 1709 ntBASIC15.28■□□□□ 0.04
SRP54P61011 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 AC010491.1-201ENST00000563101 2797 ntBASIC15.28■□□□□ 0.04
SRP54P61011 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SRP54P61011 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SRP54P61011 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SRP54P61011 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms