Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC19.8■□□□□ 0.76
COL18A1P39060 RBM8B-201ENST00000555532 525 ntBASIC19.8■□□□□ 0.76
COL18A1P39060 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
COL18A1P39060 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL18A1P39060 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.8■□□□□ 0.76
COL18A1P39060 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
COL18A1P39060 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 ZBED1P1-201ENST00000502364 1930 ntBASIC19.8■□□□□ 0.76
COL18A1P39060 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC19.8■□□□□ 0.76
COL18A1P39060 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.8■□□□□ 0.76
COL18A1P39060 PCDHB19P-201ENST00000570871 2371 ntBASIC19.8■□□□□ 0.76
COL18A1P39060 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
COL18A1P39060 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
COL18A1P39060 CCNC-217ENST00000523985 958 ntTSL 2 BASIC19.8■□□□□ 0.76
COL18A1P39060 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC19.8■□□□□ 0.76
COL18A1P39060 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC19.8■□□□□ 0.76
COL18A1P39060 MIR3188-201ENST00000583494 85 ntBASIC19.8■□□□□ 0.76
COL18A1P39060 AC084781.1-201ENST00000613737 656 ntBASIC19.8■□□□□ 0.76
COL18A1P39060 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC19.8■□□□□ 0.76
COL18A1P39060 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC19.79■□□□□ 0.76
COL18A1P39060 POU5F1P2-201ENST00000521750 823 ntBASIC19.79■□□□□ 0.76
COL18A1P39060 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC19.79■□□□□ 0.76
COL18A1P39060 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC19.79■□□□□ 0.76
COL18A1P39060 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC19.79■□□□□ 0.76
COL18A1P39060 AC009884.2-201ENST00000603110 324 ntBASIC19.79■□□□□ 0.76
COL18A1P39060 AC092299.1-201ENST00000632679 757 ntBASIC19.79■□□□□ 0.76
COL18A1P39060 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
COL18A1P39060 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC19.79■□□□□ 0.76
COL18A1P39060 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL18A1P39060 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.79■□□□□ 0.76
COL18A1P39060 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC19.78■□□□□ 0.76
COL18A1P39060 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC19.78■□□□□ 0.76
COL18A1P39060 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC19.78■□□□□ 0.76
COL18A1P39060 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC19.78■□□□□ 0.76
COL18A1P39060 AC130709.1-201ENST00000484779 1212 ntBASIC19.78■□□□□ 0.76
COL18A1P39060 MRPL22P1-201ENST00000505398 616 ntBASIC19.78■□□□□ 0.76
COL18A1P39060 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.78■□□□□ 0.76
COL18A1P39060 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC19.78■□□□□ 0.76
COL18A1P39060 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC19.78■□□□□ 0.76
COL18A1P39060 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL18A1P39060 RPL8P2-201ENST00000430538 502 ntBASIC19.78■□□□□ 0.76
COL18A1P39060 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC19.78■□□□□ 0.76
COL18A1P39060 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL18A1P39060 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
COL18A1P39060 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC19.78■□□□□ 0.76
COL18A1P39060 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms