Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 AC013726.1-201ENST00000563747 2285 ntBASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS29Q9UBQ0 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 AC100757.3-201ENST00000622361 1406 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 TREML5P-201ENST00000421694 576 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 TIMM17BP1-201ENST00000545713 516 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 AC044860.1-202ENST00000559481 777 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 AC025181.2-201ENST00000606994 802 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 AL844908.2-201ENST00000609461 460 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 AL590560.3-201ENST00000623350 461 ntBASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
VPS29Q9UBQ0 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 AL513477.1-201ENST00000602865 2407 ntBASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS29Q9UBQ0 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms