Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.92■□□□□ 0.78
ABCA3Q99758 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ABCA3Q99758 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC19.92■□□□□ 0.78
ABCA3Q99758 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC19.92■□□□□ 0.78
ABCA3Q99758 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC19.92■□□□□ 0.78
ABCA3Q99758 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ABCA3Q99758 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
ABCA3Q99758 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ABCA3Q99758 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ABCA3Q99758 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ABCA3Q99758 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC19.91■□□□□ 0.78
ABCA3Q99758 CR383656.3-201ENST00000551315 183 ntBASIC19.91■□□□□ 0.78
ABCA3Q99758 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.91■□□□□ 0.78
ABCA3Q99758 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.91■□□□□ 0.78
ABCA3Q99758 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.91■□□□□ 0.78
ABCA3Q99758 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.91■□□□□ 0.78
ABCA3Q99758 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA3Q99758 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC19.91■□□□□ 0.78
ABCA3Q99758 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.91■□□□□ 0.78
ABCA3Q99758 AL359258.3-201ENST00000622910 2331 ntBASIC19.91■□□□□ 0.78
ABCA3Q99758 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC19.9■□□□□ 0.78
ABCA3Q99758 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC19.9■□□□□ 0.78
ABCA3Q99758 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC19.9■□□□□ 0.78
ABCA3Q99758 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.9■□□□□ 0.78
ABCA3Q99758 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
ABCA3Q99758 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC19.9■□□□□ 0.78
ABCA3Q99758 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
ABCA3Q99758 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
ABCA3Q99758 SERF2-206ENST00000409291 807 ntTSL 3 BASIC19.9■□□□□ 0.78
ABCA3Q99758 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 PTPA-215ENST00000432124 567 ntTSL 4 BASIC19.9■□□□□ 0.78
ABCA3Q99758 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC19.9■□□□□ 0.78
ABCA3Q99758 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC19.9■□□□□ 0.78
ABCA3Q99758 AC131206.1-201ENST00000538078 1211 ntBASIC19.9■□□□□ 0.78
ABCA3Q99758 MIR3180-2-201ENST00000581748 88 ntBASIC19.9■□□□□ 0.78
ABCA3Q99758 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
ABCA3Q99758 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA3Q99758 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
ABCA3Q99758 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
ABCA3Q99758 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
ABCA3Q99758 STK33-217ENST00000534493 1895 ntTSL 2 BASIC19.89■□□□□ 0.78
ABCA3Q99758 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
ABCA3Q99758 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
ABCA3Q99758 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC19.89■□□□□ 0.77
ABCA3Q99758 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 COX20P1-201ENST00000366529 357 ntBASIC19.89■□□□□ 0.77
ABCA3Q99758 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC19.89■□□□□ 0.77
ABCA3Q99758 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC19.89■□□□□ 0.77
ABCA3Q99758 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC19.89■□□□□ 0.77
ABCA3Q99758 SIGLEC18P-201ENST00000602271 909 ntBASIC19.89■□□□□ 0.77
ABCA3Q99758 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC19.89■□□□□ 0.77
ABCA3Q99758 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC19.89■□□□□ 0.77
ABCA3Q99758 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC19.89■□□□□ 0.77
ABCA3Q99758 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC19.89■□□□□ 0.77
ABCA3Q99758 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA3Q99758 AL603832.2-201ENST00000566195 2125 ntBASIC19.89■□□□□ 0.77
ABCA3Q99758 PCDHA12-202ENST00000613593 2588 ntBASIC19.88■□□□□ 0.77
ABCA3Q99758 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
ABCA3Q99758 NHP2-202ENST00000314397 599 ntTSL 2 BASIC19.88■□□□□ 0.77
ABCA3Q99758 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ABCA3Q99758 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ABCA3Q99758 BANF1P3-201ENST00000412556 261 ntBASIC19.88■□□□□ 0.77
ABCA3Q99758 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC19.88■□□□□ 0.77
ABCA3Q99758 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ABCA3Q99758 RN7SL596P-201ENST00000582123 288 ntBASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms