Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.22□□□□□ -0.29
COL12A1Q99715 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL12A1Q99715 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL12A1Q99715 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.22□□□□□ -0.29
COL12A1Q99715 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 AL645608.8-201ENST00000606034 2086 ntBASIC13.22□□□□□ -0.29
COL12A1Q99715 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC13.22□□□□□ -0.29
COL12A1Q99715 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC13.22□□□□□ -0.29
COL12A1Q99715 CHCHD2P2-201ENST00000503744 321 ntBASIC13.22□□□□□ -0.29
COL12A1Q99715 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
COL12A1Q99715 AL157813.1-201ENST00000612996 587 ntBASIC13.22□□□□□ -0.29
COL12A1Q99715 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.22□□□□□ -0.29
COL12A1Q99715 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.22□□□□□ -0.29
COL12A1Q99715 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.22□□□□□ -0.29
COL12A1Q99715 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
COL12A1Q99715 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
COL12A1Q99715 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
COL12A1Q99715 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
COL12A1Q99715 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
COL12A1Q99715 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
COL12A1Q99715 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC13.21□□□□□ -0.29
COL12A1Q99715 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC13.21□□□□□ -0.29
COL12A1Q99715 MED11-202ENST00000573708 802 ntTSL 2 BASIC13.21□□□□□ -0.29
COL12A1Q99715 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
COL12A1Q99715 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 AC106886.4-201ENST00000623557 2502 ntBASIC13.21□□□□□ -0.29
COL12A1Q99715 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.21□□□□□ -0.29
COL12A1Q99715 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.21□□□□□ -0.29
COL12A1Q99715 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.21□□□□□ -0.29
COL12A1Q99715 AL645937.2-201ENST00000396808 931 ntBASIC13.21□□□□□ -0.29
COL12A1Q99715 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 AC010141.1-201ENST00000411585 623 ntBASIC13.21□□□□□ -0.29
COL12A1Q99715 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 TREHP1-201ENST00000531328 465 ntBASIC13.21□□□□□ -0.29
COL12A1Q99715 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC13.21□□□□□ -0.29
COL12A1Q99715 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.21□□□□□ -0.29
COL12A1Q99715 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC13.21□□□□□ -0.29
COL12A1Q99715 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC13.21□□□□□ -0.29
COL12A1Q99715 AC011471.3-201ENST00000623576 402 ntBASIC13.21□□□□□ -0.29
COL12A1Q99715 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
COL12A1Q99715 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.21□□□□□ -0.29
COL12A1Q99715 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.21□□□□□ -0.29
COL12A1Q99715 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL12A1Q99715 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL12A1Q99715 AC011840.2-201ENST00000563063 1520 ntBASIC13.21□□□□□ -0.3
COL12A1Q99715 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
COL12A1Q99715 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL12A1Q99715 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
COL12A1Q99715 LINC00554-201ENST00000564841 3011 ntBASIC13.21□□□□□ -0.3
COL12A1Q99715 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.21□□□□□ -0.3
COL12A1Q99715 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
COL12A1Q99715 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC13.21□□□□□ -0.3
COL12A1Q99715 AREG-202ENST00000502307 956 ntTSL 5 BASIC13.21□□□□□ -0.3
COL12A1Q99715 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.21□□□□□ -0.3
COL12A1Q99715 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.21□□□□□ -0.3
COL12A1Q99715 PKD1P6-201ENST00000343738 4769 ntBASIC13.21□□□□□ -0.3
COL12A1Q99715 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
COL12A1Q99715 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.21□□□□□ -0.3
COL12A1Q99715 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
COL12A1Q99715 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL12A1Q99715 FLJ38576-201ENST00000623820 2459 ntBASIC13.2□□□□□ -0.3
COL12A1Q99715 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.2□□□□□ -0.3
COL12A1Q99715 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC13.2□□□□□ -0.3
COL12A1Q99715 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC13.2□□□□□ -0.3
COL12A1Q99715 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms