Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 AC069224.1-201ENST00000566372 1715 ntBASIC16.4■□□□□ 0.22
LIG3P49916 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.4■□□□□ 0.22
LIG3P49916 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.4■□□□□ 0.22
LIG3P49916 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.4■□□□□ 0.22
LIG3P49916 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.4■□□□□ 0.22
LIG3P49916 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.4■□□□□ 0.22
LIG3P49916 AC067863.1-201ENST00000494933 530 ntBASIC16.4■□□□□ 0.22
LIG3P49916 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.4■□□□□ 0.22
LIG3P49916 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.4■□□□□ 0.22
LIG3P49916 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LIG3P49916 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LIG3P49916 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
LIG3P49916 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LIG3P49916 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIG3P49916 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.4■□□□□ 0.22
LIG3P49916 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
LIG3P49916 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.39■□□□□ 0.22
LIG3P49916 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC16.39■□□□□ 0.22
LIG3P49916 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.39■□□□□ 0.21
LIG3P49916 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.39■□□□□ 0.21
LIG3P49916 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
LIG3P49916 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 HLA-H-201ENST00000383620 1096 ntBASIC16.39■□□□□ 0.21
LIG3P49916 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.39■□□□□ 0.21
LIG3P49916 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.39■□□□□ 0.21
LIG3P49916 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.39■□□□□ 0.21
LIG3P49916 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
LIG3P49916 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 AC006504.5-208ENST00000588784 2401 ntBASIC16.39■□□□□ 0.21
LIG3P49916 REXO1L8P-201ENST00000604378 1897 ntBASIC16.39■□□□□ 0.21
LIG3P49916 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LIG3P49916 LINC01144-201ENST00000626198 1710 ntBASIC16.39■□□□□ 0.21
LIG3P49916 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIG3P49916 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.39■□□□□ 0.21
LIG3P49916 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LIG3P49916 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LIG3P49916 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.38■□□□□ 0.21
LIG3P49916 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 LINC01230-201ENST00000625222 3017 ntBASIC16.38■□□□□ 0.21
LIG3P49916 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.38■□□□□ 0.21
LIG3P49916 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.38■□□□□ 0.21
LIG3P49916 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 AL122018.1-201ENST00000446607 2310 ntBASIC16.38■□□□□ 0.21
LIG3P49916 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 HMGN1P19-201ENST00000436976 333 ntBASIC16.38■□□□□ 0.21
LIG3P49916 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.38■□□□□ 0.21
LIG3P49916 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.38■□□□□ 0.21
LIG3P49916 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.38■□□□□ 0.21
LIG3P49916 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.38■□□□□ 0.21
LIG3P49916 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIG3P49916 DUX4L27-201ENST00000554796 1261 ntBASIC16.38■□□□□ 0.21
LIG3P49916 AC051619.7-201ENST00000568314 623 ntBASIC16.38■□□□□ 0.21
LIG3P49916 MIR4453-201ENST00000584019 89 ntBASIC16.38■□□□□ 0.21
LIG3P49916 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.38■□□□□ 0.21
LIG3P49916 AC018529.1-201ENST00000613063 361 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms