Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 AC118758.2-201ENST00000614242 2813 ntBASIC12.76□□□□□ -0.37
CDX1P47902 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.76□□□□□ -0.37
CDX1P47902 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 AL139385.1-201ENST00000611744 3272 ntBASIC12.76□□□□□ -0.37
CDX1P47902 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
CDX1P47902 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.76□□□□□ -0.37
CDX1P47902 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
CDX1P47902 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CDX1P47902 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
CDX1P47902 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 HLA-H-201ENST00000383620 1096 ntBASIC12.75□□□□□ -0.37
CDX1P47902 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.75□□□□□ -0.37
CDX1P47902 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC12.75□□□□□ -0.37
CDX1P47902 HAL-202ENST00000538703 2637 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 AC051619.7-201ENST00000568314 623 ntBASIC12.75□□□□□ -0.37
CDX1P47902 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
CDX1P47902 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 AC093512.1-201ENST00000617969 520 ntBASIC12.75□□□□□ -0.37
CDX1P47902 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDX1P47902 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CDX1P47902 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 GALC-206ENST00000544807 2528 ntTSL 2 BASIC12.75□□□□□ -0.37
CDX1P47902 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 AC006449.6-201ENST00000612330 2296 ntBASIC12.74□□□□□ -0.37
CDX1P47902 TCAF1P1-201ENST00000414990 2232 ntBASIC12.74□□□□□ -0.37
CDX1P47902 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CDX1P47902 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 AL031731.1-201ENST00000642131 2094 ntBASIC12.74□□□□□ -0.37
CDX1P47902 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.74□□□□□ -0.37
CDX1P47902 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC12.74□□□□□ -0.37
CDX1P47902 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC12.74□□□□□ -0.37
CDX1P47902 AC099521.3-201ENST00000624251 2938 ntBASIC12.74□□□□□ -0.37
CDX1P47902 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDX1P47902 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms