Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 FRMPD2B-201ENST00000431305 1347 ntBASIC11.73□□□□□ -0.53
COL6A5A8TX70 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 FAU-201ENST00000279259 461 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 SURF4-203ENST00000371991 715 ntTSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 RPL35P9-201ENST00000446059 350 ntBASIC11.73□□□□□ -0.53
COL6A5A8TX70 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 SRP14-204ENST00000558720 780 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 AC009884.2-201ENST00000603110 324 ntBASIC11.73□□□□□ -0.53
COL6A5A8TX70 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC11.73□□□□□ -0.53
COL6A5A8TX70 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 NEFHP1-201ENST00000412845 2629 ntBASIC11.72□□□□□ -0.53
COL6A5A8TX70 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 AC002472.3-201ENST00000640124 621 ntBASIC11.72□□□□□ -0.53
COL6A5A8TX70 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 ACE-204ENST00000428043 5120 ntTSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 CTBP2P8-201ENST00000422584 1330 ntBASIC11.72□□□□□ -0.53
COL6A5A8TX70 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 AC011840.2-201ENST00000563063 1520 ntBASIC11.72□□□□□ -0.53
COL6A5A8TX70 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
COL6A5A8TX70 NME4-203ENST00000397722 1232 ntTSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC11.72□□□□□ -0.53
COL6A5A8TX70 MIR2392-201ENST00000584881 84 ntBASIC11.72□□□□□ -0.53
COL6A5A8TX70 AC015912.3-201ENST00000619432 348 ntBASIC11.72□□□□□ -0.53
COL6A5A8TX70 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 RNF216P1-203ENST00000404404 2427 ntBASIC11.71□□□□□ -0.53
COL6A5A8TX70 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 HLA-DQB1-202ENST00000399079 1501 ntBASIC11.71□□□□□ -0.53
COL6A5A8TX70 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 BX088651.3-201ENST00000418155 352 ntBASIC11.71□□□□□ -0.53
COL6A5A8TX70 RBM4-207ENST00000506523 654 ntTSL 3 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 AL590235.1-201ENST00000564650 861 ntBASIC11.71□□□□□ -0.53
COL6A5A8TX70 AC005962.1-201ENST00000584100 773 ntBASIC11.71□□□□□ -0.53
COL6A5A8TX70 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
COL6A5A8TX70 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC11.71□□□□□ -0.53
COL6A5A8TX70 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
COL6A5A8TX70 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
COL6A5A8TX70 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
COL6A5A8TX70 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC11.71□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms