Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
YBX1P67809 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.12■□□□□ 0.01
YBX1P67809 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
YBX1P67809 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
YBX1P67809 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
YBX1P67809 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.11■□□□□ 0.01
YBX1P67809 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
YBX1P67809 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.11■□□□□ 0.01
YBX1P67809 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 AC005912.2-201ENST00000619492 2400 ntBASIC15.11■□□□□ 0.01
YBX1P67809 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 TOMM22P5-201ENST00000416399 439 ntBASIC15.11■□□□□ 0.01
YBX1P67809 FAM207CP-201ENST00000443486 507 ntBASIC15.11■□□□□ 0.01
YBX1P67809 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 MEIS3P1-201ENST00000495167 958 ntBASIC15.11■□□□□ 0.01
YBX1P67809 TPRX2P-201ENST00000535362 881 ntBASIC15.11■□□□□ 0.01
YBX1P67809 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.11■□□□□ 0.01
YBX1P67809 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.11■□□□□ 0.01
YBX1P67809 CHCHD2P3-201ENST00000603038 451 ntBASIC15.11■□□□□ 0.01
YBX1P67809 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.11■□□□□ 0.01
YBX1P67809 AC009118.2-201ENST00000613275 655 ntBASIC15.11■□□□□ 0.01
YBX1P67809 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.11■□□□□ 0.01
YBX1P67809 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
YBX1P67809 AC007541.1-201ENST00000570282 1469 ntBASIC15.11■□□□□ 0.01
YBX1P67809 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.11■□□□□ 0.01
YBX1P67809 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
YBX1P67809 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.1■□□□□ 0.01
YBX1P67809 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
YBX1P67809 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.1■□□□□ 0.01
YBX1P67809 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
YBX1P67809 AC098850.1-201ENST00000419919 790 ntBASIC15.1■□□□□ 0.01
YBX1P67809 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.1■□□□□ 0.01
YBX1P67809 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.1■□□□□ 0.01
YBX1P67809 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.1■□□□□ 0.01
YBX1P67809 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
YBX1P67809 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.1■□□□□ 0.01
YBX1P67809 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.1■□□□□ 0.01
YBX1P67809 AL132655.2-201ENST00000596276 594 ntBASIC15.1■□□□□ 0.01
YBX1P67809 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.1■□□□□ 0.01
YBX1P67809 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.1■□□□□ 0.01
YBX1P67809 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 AC013726.1-201ENST00000563747 2285 ntBASIC15.1■□□□□ 0.01
YBX1P67809 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
YBX1P67809 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.1■□□□□ 0.01
YBX1P67809 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
YBX1P67809 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
YBX1P67809 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.09■□□□□ 0.01
YBX1P67809 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
YBX1P67809 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
YBX1P67809 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
YBX1P67809 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
YBX1P67809 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.09■□□□□ 0.01
YBX1P67809 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
YBX1P67809 AC023024.2-201ENST00000623561 1993 ntBASIC15.09■□□□□ 0.01
YBX1P67809 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.09■□□□□ 0.01
YBX1P67809 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.09■□□□□ 0.01
YBX1P67809 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
YBX1P67809 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
YBX1P67809 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
YBX1P67809 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
YBX1P67809 AL121723.1-201ENST00000445194 1519 ntBASIC15.09■□□□□ 0.01
YBX1P67809 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
YBX1P67809 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.09■□□□□ 0.01
YBX1P67809 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.09■□□□□ 0.01
YBX1P67809 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.09■□□□□ 0.01
YBX1P67809 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms